Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PG0093 |
Symbol | |
ID | 2552602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Porphyromonas gingivalis W83 |
Kingdom | Bacteria |
Replicon accession | NC_002950 |
Strand | - |
Start bp | 108733 |
End bp | 109728 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637148903 |
Product | HlyD family secretion protein |
Protein accession | NP_904441 |
Protein GI | 34539962 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0320304 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGACA ACAAACAACG TAATATCGTA TTCCCGGCGT TTCTCCTCTT GCTGGGAGTC ATCGCAGTGG TGACGATCGT TGGTTTTTTC ATGCTCAGAC CGGCCGAGGA GATTATCCAA GGACAGATAG AAGTGACCGA ATACCGAGTG TCCAGCAAAG TGCCCGGGCG CATCAAGGAA CTTAGGGTAT CCGAGGGACA GCAGGTGCAG GCCGGCGATA CCCTCGCTGT CATCGAAGCC CCCGACGTAG CGGCTAAGAT GGAGCAGGCA AAGGCTGCCG AAGCAGCTGC ACAGGCTCAG AACGCCAAGG CTCTCAAAGG AGCACGCAGC GAACAGATAC AGGCAGCCTA TGAGATGTGG CAGAAAGCTC AGGCCGGCGT AGCCATAGCG ACCAAGACAC ACCAGCGCGT GCAGAACCTC TATGACCAGG GAGTGGTACC GGCTCAGAAG TTGGACGAAG CCACTGCCCA GCGCGATGCG GCCATCGCTA CGCAAAAAGC GGCCGAAGCC CAGTACAATA TGGCTCGCAA CGGTGCCGAA CGCGAAGACA AGCTGGCAGC TTCTGCCCTC GTCGATAGAG CGAGAGGAGC CGTCGCCGAG GTGGAGTCGT ACATCAACGA AACCTACCTC ATCGCCCCAC GGGCAGGCGA AGTGTCGGAG ATATTCCCCA AAGCCGGCGA ACTCGTAGGT ACCGGCGCAC CTATCATGAA TATCGCCGAG ATGGGCGATA TGTGGGCCAG CTTTGCCGTT CGTGAGGATT TCCTCAGCAG CATGACCATG GGAGCCGTTC TGGAGACTGT GGTGCCGGCT CTGAATGAAG AAAAAGTACG CTTCAAGATC ACATTCATCA AGAACATGGG TACCTATGCT GCCTGGAAAG CGACCAAGAC AACAGGGCAG TACGACCTGA AGACCTTCGA GGTAAAGGCC ACCCTTGCGG ATAAAGACAA GGCACAAAAG CTACGCCCGG GTATGTCCGT GATCATACGC AAGTAA
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Protein sequence | MTDNKQRNIV FPAFLLLLGV IAVVTIVGFF MLRPAEEIIQ GQIEVTEYRV SSKVPGRIKE LRVSEGQQVQ AGDTLAVIEA PDVAAKMEQA KAAEAAAQAQ NAKALKGARS EQIQAAYEMW QKAQAGVAIA TKTHQRVQNL YDQGVVPAQK LDEATAQRDA AIATQKAAEA QYNMARNGAE REDKLAASAL VDRARGAVAE VESYINETYL IAPRAGEVSE IFPKAGELVG TGAPIMNIAE MGDMWASFAV REDFLSSMTM GAVLETVVPA LNEEKVRFKI TFIKNMGTYA AWKATKTTGQ YDLKTFEVKA TLADKDKAQK LRPGMSVIIR K
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