Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PG0006 |
Symbol | |
ID | 2552738 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Porphyromonas gingivalis W83 |
Kingdom | Bacteria |
Replicon accession | NC_002950 |
Strand | - |
Start bp | 5094 |
End bp | 6422 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637148824 |
Product | MATE efflux family protein |
Protein accession | NP_904365 |
Protein GI | 34539886 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0243937 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTTCACT ATGCTCTGCC GGCGGTGGTG GGTACAGCAG TCAATTCGCT ATACAACATC GTAGACCGCA TCTTCATCGG GAACGGGGTG AGCGAATATG CCTTGTCGGG CTTGGCTATC ACCTTCCCAA TCCTGATCTT CCTGATGGCC TTCGGTATGC TGGTAGGGGC CGGTGCGTCC GTGAGGGTCT CTATCCTGCT GGGGAGAAAA GACATAAAGG AGGCCGAACA CACACTGGCC AATGCCATCT TCCTGACCTT CTTCACACAA GCCCTGACCA TTATCCCCTG CTATATTTTC ATGGAGCCGC TGCTTCGGCT GTTCGGAGCC AGCGAACGTA CGTTGCCGTA TGCCATGGAA TACCTCCAAT ACGTGGTTCC TGCCAATATT TTCTCAGCTC TGAGCTTCGG CTACAATGCT ATCATGAGAG CTTCGGGCTA TCCGCGCAAA GCCATGATTA CGATGATCAT CGGGGCTATG ACGAACGTGG TGCTGGACTA CATCTTCATC TATCCGTTGG GGATGGGGAT AAGCGGAGCC GCCATAGCGA CTGTCGTCTC CATGATAGTA TGTTCGGTCT ACGTCCTTTC GCACTTTTTC CGTAAGGACA GTATCGTACG TTTCCACCGC TCGGCTTTCC GCCTGTCCCT GCCGGTGATC GGCGGCATAA CGGCTATAGG GGTAGCACCC TTCGCCATGC ACCTTACGGG CAGTCTGGTC AATATCATCA TGAATCGTTC TTTCGTATCC TACGGCGAGA CAGCAGATGC TACCGACTTG GCCATCGGAG CATTCGGGAT TATCAATGGC TATGCCATGC TCTTTTTCAT GATTATCATC GGTGTGGCTC AGGGGATGCA GCCGATCGTA GGTTTCAACT ACGGGGCTAA AAATCCGGGA CGGGTGAAGT CGGCCTATCG CTACAGTTGT GGCGTCAATC TACTGGTCAG CTTTCTCGGT TTTGCTCTGG CTATGCTTAT GCCGAGGACA ATCGTGAGTC TATTCACCAA TAGCGAACAG ATGATAGAGC TATCTGCTTC GGCTCTTCGC ACGGCCTTGA TCGGGCTTTC TCTGGTCGGC TTTCAAGTTA CCACGACGCA ATTCTTCCAA AGCATCGGCT TCAGCCATAA GGCTATTTTC CTGAGCCTAA CGCGCCAGAT CATCTTCCTG ATTCCCTGTT TGCTGATTAT CCCCCGATTC ATGGGGTTGG ACGGCGTGTG GTGGAGTCTG CCGATCAGCG ATCTGGCCTC GGTCGTTTTG TCTTTTGTGC TAATTACCAT ACAGATGAAG CATTTCAATC AATCGAAAAA AACTACTTTC GCGGAGTAA
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Protein sequence | MFHYALPAVV GTAVNSLYNI VDRIFIGNGV SEYALSGLAI TFPILIFLMA FGMLVGAGAS VRVSILLGRK DIKEAEHTLA NAIFLTFFTQ ALTIIPCYIF MEPLLRLFGA SERTLPYAME YLQYVVPANI FSALSFGYNA IMRASGYPRK AMITMIIGAM TNVVLDYIFI YPLGMGISGA AIATVVSMIV CSVYVLSHFF RKDSIVRFHR SAFRLSLPVI GGITAIGVAP FAMHLTGSLV NIIMNRSFVS YGETADATDL AIGAFGIING YAMLFFMIII GVAQGMQPIV GFNYGAKNPG RVKSAYRYSC GVNLLVSFLG FALAMLMPRT IVSLFTNSEQ MIELSASALR TALIGLSLVG FQVTTTQFFQ SIGFSHKAIF LSLTRQIIFL IPCLLIIPRF MGLDGVWWSL PISDLASVVL SFVLITIQMK HFNQSKKTTF AE
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