| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5383 |
|---|
| Symbol | copR |
|---|
| ID | 1042060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 6134976 |
|---|
| End bp | 6135653 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637148782 |
|---|
| Product | two component heavy metal response transcriptional regulator |
|---|
| Protein accession | NP_747484 |
|---|
| Protein GI | 26992059 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR01387] heavy metal response regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.651671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAC TCGTAGCTGA GGATGAACCG AAAACTGGTG CTTATTTACA ACAGGGCCTT
GCAGAGGCGG GATTCACTGT TGACCGGGTC CTCACGGGTA CCGATGCCCT TCAACATGCA
CTCAGCGAAA GCTATGACCT GCTGATACTC GACGTGATGA TGCCGGGGCT AGAAGGATGG
GAAGTCTTGC GAATGGTCCG CGCAGCCGGC AAAGACGTCC CGGTATTGTT TCTGACTGCC
AGGGATGGGG TAGATGATCG AGTGAAAGGC CTTGAGCTGG GAGCCGATGA CTACCTGATC
AAGCCCTTCG CTTTCTCAGA GCTACTGGCT CGGGTGCGGA CCTTGCTTCG CCGAGGCACC
AGCACAGCAG CCCAGACCAC CATGAAAATG GCGGATCTTG AGGTAGATCT CCTCAAGCGA
AGAGCTACTC GAAGTGGCAA GCGAATCGAC CTGACCGCTA AAGAGTTTTC ACTTCTGGAG
CTTTTGATGC GCCGGCGCGG TGAGGTGCTC CCCAAATCTC TGATTGCGTC CCAGGTGTGG
GACATGAACT TCGACAGCGA CACCAATGTG ATCGAGGTTG CGATACGACG GCTACGGGCA
AAGATCGATG ATGACTTTGC CCCTAAGCTG ATTCACACAG CTCGGGGAAT GGGCTACATG
ATGGATGCAC CGGAGTGA
|
|---|
| Protein sequence | MKLLVAEDEP KTGAYLQQGL AEAGFTVDRV LTGTDALQHA LSESYDLLIL DVMMPGLEGW
EVLRMVRAAG KDVPVLFLTA RDGVDDRVKG LELGADDYLI KPFAFSELLA RVRTLLRRGT
STAAQTTMKM ADLEVDLLKR RATRSGKRID LTAKEFSLLE LLMRRRGEVL PKSLIASQVW
DMNFDSDTNV IEVAIRRLRA KIDDDFAPKL IHTARGMGYM MDAPE
|
|---|
| |