Gene PP_5284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_5284 
SymbolradC 
ID1045679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp6032863 
End bp6033543 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content60% 
IMG OID637148683 
ProductDNA repair protein RadC 
Protein accessionNP_747385 
Protein GI26991960 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCA GGGAGTGGCC GGCGGAAGAA CGGCCTAGGG AGAAGTTGTT GCAGCGAGGG 
GCAGGGAGCC TGACAGATAC GGAGCTGCTG GCCGTTTTTC TCGGCTCAGG CGTACGTGGG
TGTAATGTCG TGGAGCTTTC TCGAGGCTTG TTGGTGAAGT TCGGCAGCTT GCGCCGGTTG
CTGGAGGCCG ACCGCGAGGC CTTCGTCGGC GAGCTTGGGT TGGGCCCGGT GAGGTACAGC
CAGCTGCAGG CACTGCTTGA GATAGGCCGC AGGCACCTTG CAACGTCGAT TGAGCGGGAG
TCTGCCATGG ACAGCCCGGC AGCGGTGCGA CGCTACTTGA AAGCCATGCT CAGGCATGAG
GCCAGCGAGG TGTTCGGGTG TCTGTTTCTC GATACCAAGC ACCGGCCACT GGCATTCGAG
ATCCTGTTCA GGGGCACGAT AGATCGGGCG AGTGTCTATC CGCGAGAGGT GGTGCGGCGG
GCGCTGGTGC ACAACGCTGC GGCATTGATC CTGTGCCACA ACCATCCTTC AGGGATCAGT
GAACCGAGTC AGGACGATGT GCATTTGACG CTGTCGTTGA AGCGGGGGCT GGCGTTGATT
GATGTGCGGG TGCTGGATCA CATCATCATT GGTGATGGGG AGCCGTTGTC GATGGTCGAG
CATGGGTGGA TTGTGGTCTG A
 
Protein sequence
MNIREWPAEE RPREKLLQRG AGSLTDTELL AVFLGSGVRG CNVVELSRGL LVKFGSLRRL 
LEADREAFVG ELGLGPVRYS QLQALLEIGR RHLATSIERE SAMDSPAAVR RYLKAMLRHE
ASEVFGCLFL DTKHRPLAFE ILFRGTIDRA SVYPREVVRR ALVHNAAALI LCHNHPSGIS
EPSQDDVHLT LSLKRGLALI DVRVLDHIII GDGEPLSMVE HGWIVV