| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5283 |
|---|
| Symbol | |
|---|
| ID | 1042261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 6031138 |
|---|
| End bp | 6032727 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637148682 |
|---|
| Product | periplasmic dipeptide-binding protein, putative |
|---|
| Protein accession | NP_747384 |
|---|
| Protein GI | 26991959 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTCG CCGCACTTTC CTTATTGTTC ACCACCCTGT TCGCCGCTGG CGCTGCCCAG
GCCGCTCCGC TGAGCGTTTG CAGCGAGGCC AGCCCCGAAG GCTTCGACGT GGTCCAGTAC
AATTCGCTCA CCACCACCAA CGCCACCGCC GACGTGCTGA TGAACCGCCT GGTGGAGTTC
GATGCGGCGC AAGGCAAGGT GGTGCCGAGC CTGGCGACCA GCTGGACGGT ATCGGCCGAC
GGCCTGGTGT ATGACTTCAC CCTGCGCGAT GACGTCAAGT TTCACAGCAC CTCCTATTTC
AAGCCAAGCC GCAAGCTGAA TGCCGACGAC GTGCTGTTCA GCTTCCAGCG CATGCTCTAC
CCGGCCCATG CCTGGCACAA GACTGCGCCG GGCGGCTACC CGCATGCCCA ATCGCTGCAG
CTGGGCAGCC TGATCAAGGC GATCGAGGCA CCGTCGCCGA ACACCGTGCG CTTCACCCTC
AGCCACCCGG ACGCCACCTT CCTGGCCACC CTGAGCATGG GCTTCGCCTC GATCTACTCC
GCAGAATACG CTGACAAGCT GCTCAAGGCC GGCACACCGG AAAAGCTCAA CAACCAACCG
ATCGGCACCG GGCCGTTCGT GTTCCAGCGT TTCCAGAAAG ACGCCGTGGT GCGCTACCGC
GCCAACCCGG ACTACTTCGC CGGCAAGCCG GCGGTCGACC CGCTGATCTT CGCCATCACC
ACCGATGCCA ACGTGCGCCT GCAGAAGCTC AAGCGTGGCG AGTGCCAGGT TGCCCTGTCG
CCCAAGCCGT TGGACATTGC CGAAGCGGGC CAGGACGGTA ACCTCAAGGT GGCCACCACC
CCGGCATTCA TGACTGCCTT CGTGGCCATC AACAGCCAGC ACCCGCCGCT GGACAAGCCG
GAAGTGCGTC AGGCGATCAA CCTGGCCTTC GACAGGCAAG CCTACCTCAA GGCCGTGTTC
GAAGACTCTG CGGTGGCTGC CAATGGCCCC TACCCGCCCA ATACCTGGAG CTACGCCAAG
GACCTGCCCG GCTACCCGCT GGACCTGAAG AAAGCCAAGG CCCTGCTGGC CAAGGCCGGC
CTGGCCGAAG GCTTCAGTAC CACCATCTGG ACCCGGCCCT CGGGTAGCCT GCTCAACCCC
AACCCCAGCC TTGGCGCGCA GATGCTGCAA GCCGACTTGG CGAAGATTGG TATCAAGGCT
GAAATCCGCG TGATCGAATG GGGCGAGCTT ATCCGCCGCG CCAAGGCCGG CGAGCATGAC
TTGCTGTTCA TGGGCTGGGC GGGCGACAAC GGCGACCCGG ACAACTTCCT CAGCCCGCAG
TTTTCCTGTG CGGCGGTCGA GTCAGGGACC AACTTCGCAC GCTTCTGCGA CAGCCGCCTC
GACCAGCTGA TCAGCGCCGG GCGCACCACC AACGACCAGA GCGTACGCAG CCGGCTGTAC
CAGCAGGCGC AGACACTGAT CCAGCAGCAG GCGCTGTGGG TGCCACTGGC GCACCCGACG
GCGGCGACCT TGCTGCGCCA AGGCGTCGAG GGGTACCAGG TGAGCCCGTT CGGGCGGCTG
GATTTCAGCA AGGTGACGGT GACCAAGTAA
|
|---|
| Protein sequence | MRVAALSLLF TTLFAAGAAQ AAPLSVCSEA SPEGFDVVQY NSLTTTNATA DVLMNRLVEF
DAAQGKVVPS LATSWTVSAD GLVYDFTLRD DVKFHSTSYF KPSRKLNADD VLFSFQRMLY
PAHAWHKTAP GGYPHAQSLQ LGSLIKAIEA PSPNTVRFTL SHPDATFLAT LSMGFASIYS
AEYADKLLKA GTPEKLNNQP IGTGPFVFQR FQKDAVVRYR ANPDYFAGKP AVDPLIFAIT
TDANVRLQKL KRGECQVALS PKPLDIAEAG QDGNLKVATT PAFMTAFVAI NSQHPPLDKP
EVRQAINLAF DRQAYLKAVF EDSAVAANGP YPPNTWSYAK DLPGYPLDLK KAKALLAKAG
LAEGFSTTIW TRPSGSLLNP NPSLGAQMLQ ADLAKIGIKA EIRVIEWGEL IRRAKAGEHD
LLFMGWAGDN GDPDNFLSPQ FSCAAVESGT NFARFCDSRL DQLISAGRTT NDQSVRSRLY
QQAQTLIQQQ ALWVPLAHPT AATLLRQGVE GYQVSPFGRL DFSKVTVTK
|
|---|
| |