| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5250 |
|---|
| Symbol | |
|---|
| ID | 1044766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5992001 |
|---|
| End bp | 5993263 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637148649 |
|---|
| Product | porin, putative |
|---|
| Protein accession | NP_747351 |
|---|
| Protein GI | 26991926 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCG CCACACACGG ACCAGGCCGC GCCCTGCTCG CCACCCTCGC CCTCTGGCCG
GCGCTGAGCC ACGCCGAAGC GCCCGGCTGG TCGCTGCTCA GCCGCAACTA TTTCCTGCAC
AGTGACTTCC GCTCGCCCTC CGGCAGCGGC CAGAACTATC GCCAGGAATG GGCCCAAGGC
TTCATCGGCG AGGTGCGTTC CGGTTTCACC GAAGGCACTG TCGGCGTCGG CATCGATGCC
CATGGCTTTC TTGGCCTCAA GCTCGACGGC GGCCGCGGCC ATAGCGGCAC CGGCCTGCTG
CCACGCGACA GCGATGGCCG CGCCGAGTCC GAGTACTCCA GCGCCGGTGC CGCGCTCAAA
ATGCAGTTAG GCAACACCCA ACTGCGCTAT GGCGAGATGA TGGTGGAAAC CCCGGTGTTC
GACACCGGTG ACAAACGCCT GCACCCGGAA TACGCCACCG GCTGGTGGGT GGAAAACACC
GACCAGCCCG ACTGGCGCCT GCAGGCCGGG CGTTTCACTG CCTTCAACAA CCAGGACAAC
AGCTCCACCC ACGACGACTT CAGCGGCTAC GGCGCGACCA CCCACAACCG GGCCATCAGC
CTGGCCGGTG CCACCTTCGC ACCCAACGGG CCGTTCGGCG CCGCACTGTA TGCCGGGCAA
CTGGAAAACA CCTGGCGCCA GGCCTACCTC AACCTGAACC TGGCCCAAGG CAACTGGCGC
CTGGACGGCA ACCTGTACAA AACCCGCGAT ACCGGCAACG CCAGCGCCGG GGCGATCGAC
ACCCTCGCTT ACAGCCTGCT GGCCAAGTAC AGCTTCGGCG CCCAGGCGCT GAGCGTGGCC
TACCAGAAGG TCGAGGGCGA CACCCCGTTC GACTTCGTCG GCGGCGACTC CATCTACCTG
GCCAACGCGA TCAAGTACGC CGACTTCAAC GGCCCTGGCG AGCACTCGTG GCAACTGCGC
TATGACCTGA ACTTCGCCAC CCTCGGTGCA CCTGGCCTGA GCCTGATGGG CCGCTATGTC
AGCGGCCGCG GCATCGACGG CAGCCATGCG CCTGCGGGCG GCGCCTATGT GAACCAGTAC
GGCGACGGCG GCAAGCACTG GGAACGCGAC ATCGACCTGA AATACGTGGT GCAGTCGGGG
GCAGCCAAGG ACCTGAGCCT GTCGTTCTCC CACGTCAGCC ACCGCGCCAA CCAGGCCCAG
GCGGGCGATG ATATCGACCG CATCTACCTG ATCATCGAAT ACCCACTCAA AGGCAGCTTC
TGA
|
|---|
| Protein sequence | MIRATHGPGR ALLATLALWP ALSHAEAPGW SLLSRNYFLH SDFRSPSGSG QNYRQEWAQG
FIGEVRSGFT EGTVGVGIDA HGFLGLKLDG GRGHSGTGLL PRDSDGRAES EYSSAGAALK
MQLGNTQLRY GEMMVETPVF DTGDKRLHPE YATGWWVENT DQPDWRLQAG RFTAFNNQDN
SSTHDDFSGY GATTHNRAIS LAGATFAPNG PFGAALYAGQ LENTWRQAYL NLNLAQGNWR
LDGNLYKTRD TGNASAGAID TLAYSLLAKY SFGAQALSVA YQKVEGDTPF DFVGGDSIYL
ANAIKYADFN GPGEHSWQLR YDLNFATLGA PGLSLMGRYV SGRGIDGSHA PAGGAYVNQY
GDGGKHWERD IDLKYVVQSG AAKDLSLSFS HVSHRANQAQ AGDDIDRIYL IIEYPLKGSF
|
|---|
| |