Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5150 |
Symbol | rpiA |
ID | 1042566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5876295 |
End bp | 5876969 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637148549 |
Product | ribose-5-phosphate isomerase A |
Protein accession | NP_747251 |
Protein GI | 26991826 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0120] Ribose 5-phosphate isomerase |
TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.379246 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAGG ACCAACTCAA ACAGGCCGTC GCCCAGGCCG CTGTCGACTT CATTCTGCCC AAGCTGGATG AAAAGAGCGT CGTAGGCGTC GGTACCGGTT CGACCGCCAA CTTCTTCATC GATGCCCTGG CTCAGCACAA GACCGCGTTC GACGGCGCAG TCGCCAGCTC CGAAGCCACT GCCCAGCGCC TGAAGGGCCA TGGCATCCCG GTCTACGAAC TGAACAGCGT AAGCGAGCTT GAGTTTTACG TGGACGGTGC CGACGAGAGC GACGCACACC TGCACCTGAT CAAGGGCGGC GGCGCAGCGC TGACCCGCGA AAAGATCGTC GCGGCCGTGG CCAAGACCTT CATCTGCATC GCCGACGGCA GCAAGCTGGT GCCGGTACTG GGGGCCTTCC CGCTGCCGGT CGAAGTGATC CCCATGGCCC GCAGTCACGT GGCGCGTCAG CTGGTGAAGC TGGGTGGCGA CCCGGTGTAC CGTGAAGGCG TGGTCACCGA CAACGGCAAC GTGATCCTGG ATGTGTACAA CCTGCAGATC ACCAACCCGG TGGAGCTGGA AGCGCAGATC AACGCCATCG TCGGCGTGGT GACCAACGGC CTGTTCGCGG CGCGGCCGGC GGATCTGCTG CTGCTGGGCA CCGCTGAAGG CGTGAAGAGC CTGAAGGCCG AGTAA
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Protein sequence | MTQDQLKQAV AQAAVDFILP KLDEKSVVGV GTGSTANFFI DALAQHKTAF DGAVASSEAT AQRLKGHGIP VYELNSVSEL EFYVDGADES DAHLHLIKGG GAALTREKIV AAVAKTFICI ADGSKLVPVL GAFPLPVEVI PMARSHVARQ LVKLGGDPVY REGVVTDNGN VILDVYNLQI TNPVELEAQI NAIVGVVTNG LFAARPADLL LLGTAEGVKS LKAE
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