Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5031 |
Symbol | |
ID | 1044217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 5732562 |
End bp | 5733965 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637148430 |
Product | amino acid ABC transporter permease |
Protein accession | NP_747132 |
Protein GI | 26991707 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.912254 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACAAG CTCAAGGTCT CAAGCGCGGG CTAAGTGCCC GCCACATCCG TTTCATGGCC CTCGGCTCCG CCATCGGCAC CGGCCTTTTC TACGGCTCTG CCTCGGCCAT CCAGATGGCA GGCCCGGCCG TTCTGCTGGC CTACCTGATC GGCGGCGCTG CAGTGTTCAT GGTCATGCGC GCCCTTGGCG AAATGGCCGT GCACAACCCG GTGGCCGGCT CCTTCGGCCA CTACGCCACC ACCTACCTCG GCCCAATGGC CGGCTTCATC CTTGGCTGGA CCTACGCTTT CGAGATGGTC ATCGTCGCCA TCGCCGACGT CACCGCGTTC GGTATCTACA TGGGCTTCTG GTTCCCGGAG GTAGCCCGCT GGATCTGGGT GCTGGGCATC GTTTTCCTGA TCGGCGGCCT CAACCTATGC AACGTCAAGG TATTCGGCGA AATGGAATTC TGGCTGTCGC TGCTCAAGGT CGGCGCCATC GTGGCGATGA TCCTGGCCGG CCTCGGCATC ATGGCTTTCG GTTTCAGCCA GGTGGGTACC GGGCATGCCG TGGGCATGAG CAACCTGTTC GACCACGGCG GCTTCATGCC TAACGGCGTG GGGGGCTTGA TTGCGTCGTT TGCCGTGGTG ATGTTCGCCT TCGGCGGTAT CGAGATCATC GGCGTCACCG CCGGCGAGGC AAAAGACCCG CAGCGCGTCA TTCCCAAAGC GATCAACGCG GTGCCACTGC GTATCCTGCT GTTCTACGTG CTCACCCTGT TCGTGCTGAT GTGCCTGTAC CCATGGCCGC AGATCGGCAG CCAGGGCAGC CCGTTCGTGC AGATCTTCAG CAACCTGGGC ATTGGCTCTG CCGCTGCCGT GCTGAACGTC GTGGTGATTT CCGCTGCCAT CTCCGCCATC AACAGCGACA TCTTTGGCGC TGGCCGCATG ATGTATGGCC TGGCCCAGCA AGGCCACGCC CCGCGCGGTT TCAGCAAGTT GTCGAAACAT GGCGTACCGT GGATGACCGT CGTGGTGATG GGGGCTGCGC TGCTGATCGG CGTATTGCTC AACTACCTGA TCCCGGAAAA TGTGTTCCTG CTGATTGCCT CGATCGCCAC CTTCGCCACG GTGTGGGTGT GGCTGATGAT CCTGCTCACC CAGGTAGCCA TGCGCCGCAG CATGAGCCGC GAGCAAGTGG CCCAGCTCAA GTTTCCGGTA CCGTTCTGGC CATACGGCCC GGCCATGGCC ATTGCGTTCA TGGTGTTCAT CTTTGGCGTG CTCGGTTACT TCCCGGACAC CCAGGCGGCA TTGATCGTCG GCGTGATCTG GGTGGTATTC CTGGTGGCGT CCTACCTGCT GTGGTGCAAG CCGCGCGCAG GGCAGGGCCA GCCGGTAGCG GAGCCGGCCG AGCTGCACCG CTAG
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Protein sequence | MQQAQGLKRG LSARHIRFMA LGSAIGTGLF YGSASAIQMA GPAVLLAYLI GGAAVFMVMR ALGEMAVHNP VAGSFGHYAT TYLGPMAGFI LGWTYAFEMV IVAIADVTAF GIYMGFWFPE VARWIWVLGI VFLIGGLNLC NVKVFGEMEF WLSLLKVGAI VAMILAGLGI MAFGFSQVGT GHAVGMSNLF DHGGFMPNGV GGLIASFAVV MFAFGGIEII GVTAGEAKDP QRVIPKAINA VPLRILLFYV LTLFVLMCLY PWPQIGSQGS PFVQIFSNLG IGSAAAVLNV VVISAAISAI NSDIFGAGRM MYGLAQQGHA PRGFSKLSKH GVPWMTVVVM GAALLIGVLL NYLIPENVFL LIASIATFAT VWVWLMILLT QVAMRRSMSR EQVAQLKFPV PFWPYGPAMA IAFMVFIFGV LGYFPDTQAA LIVGVIWVVF LVASYLLWCK PRAGQGQPVA EPAELHR
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