Gene PP_5000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_5000 
SymbolhslV 
ID1046116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5696751 
End bp5697281 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content65% 
IMG OID637148400 
ProductATP-dependent protease peptidase subunit 
Protein accessionNP_747102 
Protein GI26991677 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCACAA TCGTTTCTGT CCGCCGTAAC GGCAAAGTCG TCATGGGCGG CGACGGCCAG 
GTATCCCTCG GCAACACCGT GATGAAAGGC AACGCCAAGA AGGTGCGCCG CCTGTACCAC
GGCCAGGTCA TCGCGGGCTT CGCCGGCGCC ACTGCCGACG CCTTCACCCT GTTCGAGCGC
TTTGAAGGTC AGCTGGAAAA ACACCAGGGC CACCTGGTAC GCGCCGCCGT CGAGCTGGCC
AAGGAATGGC GTACCGACCG CTCCCTGAGC CGCCTGGAAG CCATGCTGGC CGTGGCCAAC
AAGGATGCAT CCCTGATCAT CACCGGCAAC GGTGACGTGG TCGAACCCGA AGATGGCCTG
ATCGCCATGG GGTCCGGCGG CGCCTATGCC CAGGCCGCAG CCCGTGCCCT GCTGAACAAG
ACCGACCTCT CGGCCCGCGA AATCGCCGAG ACCGCCCTGA ACATCGCCGG CGACATCTGC
GTGTTCACCA ACCACAACCT GACCATCGAG GAGCAGGACC TGGCCGACTG A
 
Protein sequence
MTTIVSVRRN GKVVMGGDGQ VSLGNTVMKG NAKKVRRLYH GQVIAGFAGA TADAFTLFER 
FEGQLEKHQG HLVRAAVELA KEWRTDRSLS RLEAMLAVAN KDASLIITGN GDVVEPEDGL
IAMGSGGAYA QAAARALLNK TDLSAREIAE TALNIAGDIC VFTNHNLTIE EQDLAD