Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4968 |
Symbol | ligB |
ID | 1041760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5660371 |
End bp | 5662071 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637148369 |
Product | NAD-dependent DNA ligase LigB |
Protein accession | NP_747071 |
Protein GI | 26991646 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGTACC TGTTGTTGTT CGCCCTGCTA TTTGTGCTGA ACACCCCATT GGCCAGGGCT GCCTCATGCC CACACTGGAA CCCGCAACAG GCCAAGGCCG AAGTTGCGCA ACTGCGCGCG ACGCTTGCCC GATGGGACGA GCACTACCAT CGGCAGGGCA TAGCCCTGGT GGCCGACGAA CTGTACGACC AGAGCCATGA GCGCCTGAAC CACCTGCAGC AGTGCTTCGC GGTTGGCACC AGCCCCTCCC CCCTGGCCAG TGCTCGCGGC CCGGTCCCCC ACCCTGTGCC GCATACCGGC GTCGACAAGC TGGCAGACCG CCAGGCCGTG GCGCGATGGA TGACCGGCAA GACCGGCGTG TGGGTACAGC CCAAGGTCGA CGGTGTTGCA GTTTCCCTCA CTTACCAACA GGGTCGATTG GTGCAGTTGA CCAGCCGGGG GGACGGTGTA CACGGCCATG ACTGGAGCCG ACACATCCCA CAGCTCGGCG CTGTCACACG GCAGTTGCCC GAGGCGGTCG ACCTGCACTT GCAAGGTGAG CTGTATCTGC GCCTGGACGA ACATGTGCAA GCCAAGGCAG GCAGCGCCAA CGCCCGGGGT ACCGTGGCAG GGCTGCTCGC ACGCAAGCAA CTGACTGGCG CACAAGGCAA CGCTATCGGC CTGTTCGTGT GGGGCTGGCC GCACGGCCCC GAGCAACAGG CCGAACGCCT CGCCCAGCTG GCACGACTGG GTTTTCCGGA CAGCCAGCTT TACAGCATCG CCATCGACAC GCTGGAGGAT GCAGCACACT GGCGCGAGCA CTGGTATCGC TCTGCTCTGC CCTTCGCCAC CGACGGTGTG ATCCTGCGCC AGGGCAGTCG GCCACCTGCC GAGCGCTGGC AGGCCAAGGC GCCATACTGG ATCGCGGCCT GGAAGTACCC CTATGCACAA GCCTTGGCCG AAGTACGCGA CGTGCGCTTT CGGGTCGGCC GCACTGGCAG GGTCACGCCC GTTCTTCACG TGCAACCCGT TACCCTCGAT GACCGGCGCA TTACCCAAGT CAGCCTTGGG TCGCTGGCGC GCTGGCAACG CCTGGATATT CGCCCTGGCG ATCAGGTGGC CATCAGCCTT GCCGGGCTGA CCATTCCGCG GCTCGAACAC GTCGTGCACC GCGCTGTAGA GCGCCAACCG ATAACCGCAC CAGCACCCGA CCAGCATCAT GCCCACAGCT GCTGGCAGGC CAGCGAGGGC TGTGATGAGC AGTTCATTGC CCGACTCACC TGGCTTGGCG GTAAACAGGG CCTGGCCTTG CCACGCACCG GGCCCGGCAC ATGGCGTCGG CTGGTCGAAG CGGGCCTGGT AACGTCCATG ACCGATTGGC TGCAGCTCGA TGCCGAGCGC CTGCAGCAGG CCCCCGGAAT CAGCAGACTC ACTGCAACAC AGATGCTGGG CAGTTTCGAC CAAGCCCGCT CACGCCCGTT CGATCAGTGG TTGCGCGCCC TTGGCGTGCC CATTGGCAAG CATTTGCCAC TGACTGGCAA CTGGCAGGCG CTGGCTTCAC GCAGTGCCGG GCAATGGCAA ACCGTGCCCG GCATCGGCGC AAAACGCTCG CGCCAACTTG TGGAATTTTT CGCGGCCTCC GAGGTGCAAG CCATTGCCGC ACAGTTGGCC GAAGCCGGCA TAGAAGGTTT CCGGACCCCA CCCCAGCGCA TTGAGCAATG A
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Protein sequence | MPYLLLFALL FVLNTPLARA ASCPHWNPQQ AKAEVAQLRA TLARWDEHYH RQGIALVADE LYDQSHERLN HLQQCFAVGT SPSPLASARG PVPHPVPHTG VDKLADRQAV ARWMTGKTGV WVQPKVDGVA VSLTYQQGRL VQLTSRGDGV HGHDWSRHIP QLGAVTRQLP EAVDLHLQGE LYLRLDEHVQ AKAGSANARG TVAGLLARKQ LTGAQGNAIG LFVWGWPHGP EQQAERLAQL ARLGFPDSQL YSIAIDTLED AAHWREHWYR SALPFATDGV ILRQGSRPPA ERWQAKAPYW IAAWKYPYAQ ALAEVRDVRF RVGRTGRVTP VLHVQPVTLD DRRITQVSLG SLARWQRLDI RPGDQVAISL AGLTIPRLEH VVHRAVERQP ITAPAPDQHH AHSCWQASEG CDEQFIARLT WLGGKQGLAL PRTGPGTWRR LVEAGLVTSM TDWLQLDAER LQQAPGISRL TATQMLGSFD QARSRPFDQW LRALGVPIGK HLPLTGNWQA LASRSAGQWQ TVPGIGAKRS RQLVEFFAAS EVQAIAAQLA EAGIEGFRTP PQRIEQ
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