Gene PP_4968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4968 
SymbolligB 
ID1041760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5660371 
End bp5662071 
Gene Length1701 bp 
Protein Length566 aa 
Translation table11 
GC content65% 
IMG OID637148369 
ProductNAD-dependent DNA ligase LigB 
Protein accessionNP_747071 
Protein GI26991646 
COG category[L] Replication, recombination and repair 
COG ID[COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTACC TGTTGTTGTT CGCCCTGCTA TTTGTGCTGA ACACCCCATT GGCCAGGGCT 
GCCTCATGCC CACACTGGAA CCCGCAACAG GCCAAGGCCG AAGTTGCGCA ACTGCGCGCG
ACGCTTGCCC GATGGGACGA GCACTACCAT CGGCAGGGCA TAGCCCTGGT GGCCGACGAA
CTGTACGACC AGAGCCATGA GCGCCTGAAC CACCTGCAGC AGTGCTTCGC GGTTGGCACC
AGCCCCTCCC CCCTGGCCAG TGCTCGCGGC CCGGTCCCCC ACCCTGTGCC GCATACCGGC
GTCGACAAGC TGGCAGACCG CCAGGCCGTG GCGCGATGGA TGACCGGCAA GACCGGCGTG
TGGGTACAGC CCAAGGTCGA CGGTGTTGCA GTTTCCCTCA CTTACCAACA GGGTCGATTG
GTGCAGTTGA CCAGCCGGGG GGACGGTGTA CACGGCCATG ACTGGAGCCG ACACATCCCA
CAGCTCGGCG CTGTCACACG GCAGTTGCCC GAGGCGGTCG ACCTGCACTT GCAAGGTGAG
CTGTATCTGC GCCTGGACGA ACATGTGCAA GCCAAGGCAG GCAGCGCCAA CGCCCGGGGT
ACCGTGGCAG GGCTGCTCGC ACGCAAGCAA CTGACTGGCG CACAAGGCAA CGCTATCGGC
CTGTTCGTGT GGGGCTGGCC GCACGGCCCC GAGCAACAGG CCGAACGCCT CGCCCAGCTG
GCACGACTGG GTTTTCCGGA CAGCCAGCTT TACAGCATCG CCATCGACAC GCTGGAGGAT
GCAGCACACT GGCGCGAGCA CTGGTATCGC TCTGCTCTGC CCTTCGCCAC CGACGGTGTG
ATCCTGCGCC AGGGCAGTCG GCCACCTGCC GAGCGCTGGC AGGCCAAGGC GCCATACTGG
ATCGCGGCCT GGAAGTACCC CTATGCACAA GCCTTGGCCG AAGTACGCGA CGTGCGCTTT
CGGGTCGGCC GCACTGGCAG GGTCACGCCC GTTCTTCACG TGCAACCCGT TACCCTCGAT
GACCGGCGCA TTACCCAAGT CAGCCTTGGG TCGCTGGCGC GCTGGCAACG CCTGGATATT
CGCCCTGGCG ATCAGGTGGC CATCAGCCTT GCCGGGCTGA CCATTCCGCG GCTCGAACAC
GTCGTGCACC GCGCTGTAGA GCGCCAACCG ATAACCGCAC CAGCACCCGA CCAGCATCAT
GCCCACAGCT GCTGGCAGGC CAGCGAGGGC TGTGATGAGC AGTTCATTGC CCGACTCACC
TGGCTTGGCG GTAAACAGGG CCTGGCCTTG CCACGCACCG GGCCCGGCAC ATGGCGTCGG
CTGGTCGAAG CGGGCCTGGT AACGTCCATG ACCGATTGGC TGCAGCTCGA TGCCGAGCGC
CTGCAGCAGG CCCCCGGAAT CAGCAGACTC ACTGCAACAC AGATGCTGGG CAGTTTCGAC
CAAGCCCGCT CACGCCCGTT CGATCAGTGG TTGCGCGCCC TTGGCGTGCC CATTGGCAAG
CATTTGCCAC TGACTGGCAA CTGGCAGGCG CTGGCTTCAC GCAGTGCCGG GCAATGGCAA
ACCGTGCCCG GCATCGGCGC AAAACGCTCG CGCCAACTTG TGGAATTTTT CGCGGCCTCC
GAGGTGCAAG CCATTGCCGC ACAGTTGGCC GAAGCCGGCA TAGAAGGTTT CCGGACCCCA
CCCCAGCGCA TTGAGCAATG A
 
Protein sequence
MPYLLLFALL FVLNTPLARA ASCPHWNPQQ AKAEVAQLRA TLARWDEHYH RQGIALVADE 
LYDQSHERLN HLQQCFAVGT SPSPLASARG PVPHPVPHTG VDKLADRQAV ARWMTGKTGV
WVQPKVDGVA VSLTYQQGRL VQLTSRGDGV HGHDWSRHIP QLGAVTRQLP EAVDLHLQGE
LYLRLDEHVQ AKAGSANARG TVAGLLARKQ LTGAQGNAIG LFVWGWPHGP EQQAERLAQL
ARLGFPDSQL YSIAIDTLED AAHWREHWYR SALPFATDGV ILRQGSRPPA ERWQAKAPYW
IAAWKYPYAQ ALAEVRDVRF RVGRTGRVTP VLHVQPVTLD DRRITQVSLG SLARWQRLDI
RPGDQVAISL AGLTIPRLEH VVHRAVERQP ITAPAPDQHH AHSCWQASEG CDEQFIARLT
WLGGKQGLAL PRTGPGTWRR LVEAGLVTSM TDWLQLDAER LQQAPGISRL TATQMLGSFD
QARSRPFDQW LRALGVPIGK HLPLTGNWQA LASRSAGQWQ TVPGIGAKRS RQLVEFFAAS
EVQAIAAQLA EAGIEGFRTP PQRIEQ