Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4948 |
Symbol | |
ID | 1041683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5635628 |
End bp | 5637430 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637148349 |
Product | acyl-CoA dehydrogenase domain-containing protein |
Protein accession | NP_747051 |
Protein GI | 26991626 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.669366 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCGAGA CCTTGCTCAG CCCCCGCAAC CTCGCCTTCG AGCTCTACGA AGTCCTCGAC GCTGAAGCCC TGACCCTGCG CCCGCGCTTC GCCGAGCACA GCCGTGAAAC CTTCGATGCG GCACTGACCA CCGCCCGCAC CATCGCCGAA AAGTATTTCG CCCCGCACAA CCGCAAGGCC GACGAAAACG AACCACGCTA CGTGGACGGC CGCGCCGAGC TGATCCCCGA AGTTAAGCCC GCCGTCGATG CCTTCCTCGA AGCCGGCTTC CTCAACGCCA ACCGGGACTT CGAGGTCGGC GGCATGCAGC TGCCCAGCCT GGTCTCGCAA GCCTGCATCG CCCACTTCCA GGCCGCCAAC GCCGGCACCA CGGCCTACCC GTTCCTGACC ATGGGCGCGG CCAACCTGAT CGAGAGCTTC GGCTCCGATG AACAGAAGCG CCTGTTCCTG CAACCGATGA TCGACGGCCG CTACTTCGGC ACAATGGCGC TGACCGAACC CCACGCTGGC TCGTCGCTGG CCGACATACG CACCCGCGCC GAACCAGCAG GCGACGGCAG CTACCGGCTC AAAGGCAACA AGATCTTCAT TTCCGGCGGC GACCACGAAC TGTCGGAAAA CATCGTGCAC ATGGTGCTGG CCAAGCTTCC GGACGCCCCG CCCGGGGTCA AGGGCATTTC GCTGTTCATC GTGCCCAAGT ACCACGTAAA CCCGAACGGC AGCCGTGGCC CGCGCAACGA TGTGCTGCTG GCCGGGCTGT TCCACAAGAT GGGCTGGCGT GGCACCACCT CGACCGCGCT GAACTTCGGC GACAATGGCC AGTGCGTCGG GTACCTGGTC GGCCAGCCGC ACCAGGGCCT GGCCTGCATG TTCCAGATGA TGAACGAGGC GCGGATAGGC GTAGGCATGG GCGCGGTGAT GCTGGGTTAC GCCGGCTACC TTTACTCCCT GGAATACGCT CGCCAGCGGC CGCAGGGCCG ACTGCCGGAC AACAAGGACC CACACAGCCC GGCGGTACCG ATCATCGAGC ACACGGATGT GAAACGCATG CTCCTGGCGC AGAAGGCCTA CGTAGAAGGC GCCTTTGATC TGGGCCTGTA CGCCGCGCGC CTGTTCGACG ACACCCATAC GGCCCCTGAC GAAAACGCCC GCAAGCCGGC GCAGGACCTG CTCGACCTGC TGACCCCGAT CGTCAAATCC TGGCCCTCGG CGTTCTGCCT CAAAGCCAAC GAACTGGCGA TCCAGATTCT TGGCGGCCAC GGCTACACCC GCGAATACCC GGTGGAGCAG TACTACCGTG ACAATCGCCT GAACCCGATC CACGAAGGCA CGGAGGGTAT CCAGTCGCTC GATCTGCTCG GCCGCAAGCT GGCACAGCAC AATGGTGCCG GCCTCAAGCA ATTGATCCGC CTGATCGCCG CCACCTGCGA GCGCGCCAGC CATCACCCGA ACCTTGACCC ACTGCGTCAG CCGCTGGAGC AACTGGCCAA CCGCCTGCAA GGCGTAACCC TGGCCCTGCT CGGCGACCTG GCCCAAGGCA AAGTCGCTGG TGCCCTGGCC AACTCTGCCT TGTACCTCAA GGCCTTCGGC CACTGCGTGA TCGGCTGGCG CTGGCTGGAA CAGGCGGTTC ACGCCGAGCT TGGCATGCTC AAGGGAACGG CTGCTGATCG CGACTTCTAC CTCGGCAAGC TGCAAGCTGC GCGTTATTTC CTGACCTGGG AAGTACCGGG CTGCCATAAT GAGCTGGCAT TGCTCGAGGC ACACGACGAT ACCTGCCTCG GCATGCAAGA CGGGTGGTTC TAG
|
Protein sequence | MPETLLSPRN LAFELYEVLD AEALTLRPRF AEHSRETFDA ALTTARTIAE KYFAPHNRKA DENEPRYVDG RAELIPEVKP AVDAFLEAGF LNANRDFEVG GMQLPSLVSQ ACIAHFQAAN AGTTAYPFLT MGAANLIESF GSDEQKRLFL QPMIDGRYFG TMALTEPHAG SSLADIRTRA EPAGDGSYRL KGNKIFISGG DHELSENIVH MVLAKLPDAP PGVKGISLFI VPKYHVNPNG SRGPRNDVLL AGLFHKMGWR GTTSTALNFG DNGQCVGYLV GQPHQGLACM FQMMNEARIG VGMGAVMLGY AGYLYSLEYA RQRPQGRLPD NKDPHSPAVP IIEHTDVKRM LLAQKAYVEG AFDLGLYAAR LFDDTHTAPD ENARKPAQDL LDLLTPIVKS WPSAFCLKAN ELAIQILGGH GYTREYPVEQ YYRDNRLNPI HEGTEGIQSL DLLGRKLAQH NGAGLKQLIR LIAATCERAS HHPNLDPLRQ PLEQLANRLQ GVTLALLGDL AQGKVAGALA NSALYLKAFG HCVIGWRWLE QAVHAELGML KGTAADRDFY LGKLQAARYF LTWEVPGCHN ELALLEAHDD TCLGMQDGWF
|
| |