Gene PP_4948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4948 
Symbol 
ID1041683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5635628 
End bp5637430 
Gene Length1803 bp 
Protein Length600 aa 
Translation table11 
GC content64% 
IMG OID637148349 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionNP_747051 
Protein GI26991626 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.669366 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGAGA CCTTGCTCAG CCCCCGCAAC CTCGCCTTCG AGCTCTACGA AGTCCTCGAC 
GCTGAAGCCC TGACCCTGCG CCCGCGCTTC GCCGAGCACA GCCGTGAAAC CTTCGATGCG
GCACTGACCA CCGCCCGCAC CATCGCCGAA AAGTATTTCG CCCCGCACAA CCGCAAGGCC
GACGAAAACG AACCACGCTA CGTGGACGGC CGCGCCGAGC TGATCCCCGA AGTTAAGCCC
GCCGTCGATG CCTTCCTCGA AGCCGGCTTC CTCAACGCCA ACCGGGACTT CGAGGTCGGC
GGCATGCAGC TGCCCAGCCT GGTCTCGCAA GCCTGCATCG CCCACTTCCA GGCCGCCAAC
GCCGGCACCA CGGCCTACCC GTTCCTGACC ATGGGCGCGG CCAACCTGAT CGAGAGCTTC
GGCTCCGATG AACAGAAGCG CCTGTTCCTG CAACCGATGA TCGACGGCCG CTACTTCGGC
ACAATGGCGC TGACCGAACC CCACGCTGGC TCGTCGCTGG CCGACATACG CACCCGCGCC
GAACCAGCAG GCGACGGCAG CTACCGGCTC AAAGGCAACA AGATCTTCAT TTCCGGCGGC
GACCACGAAC TGTCGGAAAA CATCGTGCAC ATGGTGCTGG CCAAGCTTCC GGACGCCCCG
CCCGGGGTCA AGGGCATTTC GCTGTTCATC GTGCCCAAGT ACCACGTAAA CCCGAACGGC
AGCCGTGGCC CGCGCAACGA TGTGCTGCTG GCCGGGCTGT TCCACAAGAT GGGCTGGCGT
GGCACCACCT CGACCGCGCT GAACTTCGGC GACAATGGCC AGTGCGTCGG GTACCTGGTC
GGCCAGCCGC ACCAGGGCCT GGCCTGCATG TTCCAGATGA TGAACGAGGC GCGGATAGGC
GTAGGCATGG GCGCGGTGAT GCTGGGTTAC GCCGGCTACC TTTACTCCCT GGAATACGCT
CGCCAGCGGC CGCAGGGCCG ACTGCCGGAC AACAAGGACC CACACAGCCC GGCGGTACCG
ATCATCGAGC ACACGGATGT GAAACGCATG CTCCTGGCGC AGAAGGCCTA CGTAGAAGGC
GCCTTTGATC TGGGCCTGTA CGCCGCGCGC CTGTTCGACG ACACCCATAC GGCCCCTGAC
GAAAACGCCC GCAAGCCGGC GCAGGACCTG CTCGACCTGC TGACCCCGAT CGTCAAATCC
TGGCCCTCGG CGTTCTGCCT CAAAGCCAAC GAACTGGCGA TCCAGATTCT TGGCGGCCAC
GGCTACACCC GCGAATACCC GGTGGAGCAG TACTACCGTG ACAATCGCCT GAACCCGATC
CACGAAGGCA CGGAGGGTAT CCAGTCGCTC GATCTGCTCG GCCGCAAGCT GGCACAGCAC
AATGGTGCCG GCCTCAAGCA ATTGATCCGC CTGATCGCCG CCACCTGCGA GCGCGCCAGC
CATCACCCGA ACCTTGACCC ACTGCGTCAG CCGCTGGAGC AACTGGCCAA CCGCCTGCAA
GGCGTAACCC TGGCCCTGCT CGGCGACCTG GCCCAAGGCA AAGTCGCTGG TGCCCTGGCC
AACTCTGCCT TGTACCTCAA GGCCTTCGGC CACTGCGTGA TCGGCTGGCG CTGGCTGGAA
CAGGCGGTTC ACGCCGAGCT TGGCATGCTC AAGGGAACGG CTGCTGATCG CGACTTCTAC
CTCGGCAAGC TGCAAGCTGC GCGTTATTTC CTGACCTGGG AAGTACCGGG CTGCCATAAT
GAGCTGGCAT TGCTCGAGGC ACACGACGAT ACCTGCCTCG GCATGCAAGA CGGGTGGTTC
TAG
 
Protein sequence
MPETLLSPRN LAFELYEVLD AEALTLRPRF AEHSRETFDA ALTTARTIAE KYFAPHNRKA 
DENEPRYVDG RAELIPEVKP AVDAFLEAGF LNANRDFEVG GMQLPSLVSQ ACIAHFQAAN
AGTTAYPFLT MGAANLIESF GSDEQKRLFL QPMIDGRYFG TMALTEPHAG SSLADIRTRA
EPAGDGSYRL KGNKIFISGG DHELSENIVH MVLAKLPDAP PGVKGISLFI VPKYHVNPNG
SRGPRNDVLL AGLFHKMGWR GTTSTALNFG DNGQCVGYLV GQPHQGLACM FQMMNEARIG
VGMGAVMLGY AGYLYSLEYA RQRPQGRLPD NKDPHSPAVP IIEHTDVKRM LLAQKAYVEG
AFDLGLYAAR LFDDTHTAPD ENARKPAQDL LDLLTPIVKS WPSAFCLKAN ELAIQILGGH
GYTREYPVEQ YYRDNRLNPI HEGTEGIQSL DLLGRKLAQH NGAGLKQLIR LIAATCERAS
HHPNLDPLRQ PLEQLANRLQ GVTLALLGDL AQGKVAGALA NSALYLKAFG HCVIGWRWLE
QAVHAELGML KGTAADRDFY LGKLQAARYF LTWEVPGCHN ELALLEAHDD TCLGMQDGWF