| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4926 |
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| Symbol | |
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| ID | 1043321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5604523 |
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| End bp | 5605941 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637148327 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_747029 |
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| Protein GI | 26991604 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTGG CGTTCAAGGA CCTTGCCGAG CGCTACCGGG ATGCGTGGAG GACGGCATGG
CGAAAGCGCC GGAGCATGGA CGGCCCCGTA CGTGACCCCG ACGAACTGGC CTTTTTACCT
GCGGCACTGT CCTTGCAGGA AACGCCAGTG CATCCCTTGC CGCGCTACCT GCAGTGGAGC
CTGCTGATGT TCATCGGGCT GGCGCTTGCC TGGGCTTGCA TCGGTGAGAT CGATGTCATC
GCCAGTGCCG AAGGCAAGAT CGTGCCCAGT GGCAGGAGCA AGTTGATACA GGCCAGCGAG
GTCGCGGTGG TGCAGTCGAT CCACGTCGTC GATGGCCAGC CGGTGCGCAA AGGTGATGTG
CTGGTCGAGC TGGAAGGGCA GTTGACCGAG GCTGACATCA AGCGCCTGGG CAGCGAACTG
CTGGCTGCAC AGATCGACCA GGCCCGCGCC AGCACACTGC TGAGTGCGCT GGACGGCGAT
GTGGCACCTG CCTCCCTGGC ACCATTGATA CCGCAGGCCA CGGCCGCGCA GCAGGCAGGC
GCGCAGCGCT GGCTGGAGGG GCAATACCTG GAGTTGCAGG CCACGCTGGA ACAGGCCGAT
GCCGAAATCG GTCAACGCGC TGCCGAAATC CGTTCCGCCC AGGGCCGGGC TGACGCGCTC
CGGCAACTGT TGGTGATCAC CCGCCAACTG ACGGCGGATT ACAAGCTGTT GTTCAGTGAA
TCGGCGGTGG CCAAGCACAC CTACCTGGAA AAGGAGCAGG CCCGCCTGGA GCAGGAGCGT
GAACTGGCAC TTCAGCGCTC GCGCATCGAC GAACTGAACG CTGCACGGCT TGCTGCTCAG
CACCGCCGTA GCGGTGCCAT TGCCCAACTG CGCAGAGCCA TGCTCGACCT TCACGGTGAG
GCGCAACGGC GCATTGCAAC CCTTGAGCAG GAGTTGAACA AGGCCGAGCA GCGGCATCGC
CTCAAGGTAC TGACATCCCC CGTTGACGGC ACCGTCCAGC AGTTGGCGAT CCATACACAG
GGCGGGGTGG TTACACCCGC GCAGACACTG ATGGTCATTG TGCCGACGGG CGAGCCGGTG
GAAGTGGAAG TGAAAGTCGA GAACAAAGAT ATCGGCTTTG TTTTTCCGGG GCAGCACGTG
GAAGTGAAGA TCGAGACATT CACCTTTACC AGGTATGGCG TTGTACCGGG GGTGGTGGAG
AGTATTTCCG ATGATGCCAT TGAGGATGAT AGGCACGGTC TTTTGTATAG CGCTCGAATC
AAGTTGGCCA AGGAAGCTTT GCGCGTAGGG GATAACGACT TGCCGTTGAC GGCGGGCATG
GCTGTGCGTG CAGAAGTGAT TGTGGATAGG CGCAGGGTTA TCAGTTTCTT CTTGAGTCCC
CTGCAGCGGC ATGCAAAGGA AAGTCTGAAG GAGCGATAA
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| Protein sequence | MSVAFKDLAE RYRDAWRTAW RKRRSMDGPV RDPDELAFLP AALSLQETPV HPLPRYLQWS
LLMFIGLALA WACIGEIDVI ASAEGKIVPS GRSKLIQASE VAVVQSIHVV DGQPVRKGDV
LVELEGQLTE ADIKRLGSEL LAAQIDQARA STLLSALDGD VAPASLAPLI PQATAAQQAG
AQRWLEGQYL ELQATLEQAD AEIGQRAAEI RSAQGRADAL RQLLVITRQL TADYKLLFSE
SAVAKHTYLE KEQARLEQER ELALQRSRID ELNAARLAAQ HRRSGAIAQL RRAMLDLHGE
AQRRIATLEQ ELNKAEQRHR LKVLTSPVDG TVQQLAIHTQ GGVVTPAQTL MVIVPTGEPV
EVEVKVENKD IGFVFPGQHV EVKIETFTFT RYGVVPGVVE SISDDAIEDD RHGLLYSARI
KLAKEALRVG DNDLPLTAGM AVRAEVIVDR RRVISFFLSP LQRHAKESLK ER
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