Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4923 |
Symbol | |
ID | 1041623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5596495 |
End bp | 5597928 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637148324 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | NP_747026 |
Protein GI | 26991601 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCGCA AACTCTCACT GGCGATAGCC GTGTCTTGTG CGTCCAACGG AGTGGTCTGG GCAGCGGACG TGCCCTCGAC AGTCAAAACC GATCTGGTCA GCGTCTACCA GGAAGCAGTG GACAACAACG CCGACCTGGC TGCAGCCCGC GCCGATTACG GGGCGCGCCG CGAAGTGGTG CCGCAGGCCC GCGCCGGGTT GCTGCCAAAC CTGTCGGCCG GTGCCGAGAT GATGAACACC CGCACCAAGC TGGACGAGCC ATCCATCACG TCCAATCGCA GCGGCAACTC CTGGAGCGCG ACCCTGGCTC AGCCGATCTT CCGCGCTGAT CGCTGGTTCC AGTTGCAAGC CGCCGAAGCA GTCAACGAAC AGGCAGCCCT GGAGCTGTCG GCGACCGAGC AAAACCTGAT CCTGCAAACC GCGCAAAACT ACTTCGCCGT CCTCCGCGCC CAGGACAACC TGGCCGCCAC CAAGGCAGAA GAAGCCGCCT TCAAGCGCCA GCTGGATCAG TCCAACGAGC GTTTCGACGT GGGCCTTTCG GACAAGACCG ACGTGCTGCA ATCCCAAGCC AGTTATGACA CTGCACGGGC CAACCGGATC ATCGCCGAAC GCCAGGTGCA GGATGCCTTC GAGGCCCTGG TGACCCTGAC CAACCGTGAG TACACCTCTA TCCAGGGCGT GGTACATAGC CTGCCGGTAC AAGTGCCAAC GCCCAACGAT GCCAAAGCCT GGGTCGAAAC CGCCGGGCGC CAGAACCTCA ACCTGCTGGC CACCAACTAC GCGGTTTCTG CCGCAGAAGA GACCCTGCGT CAGCGCAAGG CCGGGCATGC ACCGACCCTG GACGCCGTGG CCAAGTACCA GAAGGGTGAC AACGACAGCC TTGGCTTCAC CAACCCATCG CAACTGGGGG TGCGCTACAG CGGCGACGTC GAGCAGACCA GCGTTGGCCT GCAACTGAAC ATACCGATCT ACAGCGGCGG CCTGACCAGC TCGCAGGTAC GCGAGGCTTA CCAGCGCCTG AGCCAGAGCG AGCAGCAGCG TGAAAGCCTG CGCCGCCAGG TCGTGGAAAA CACCCGCAAC CTGCACCGCG CAGTGAACAC CGATGTGGAA CAGGTACAGG CGCGCAAACA GTCGATCATT TCCAACCAGA GCGCGCTGGA AGCCACCGAA ATCGGCTACC AGGTCGGTAC CCGCAACATC GTCGACGTGC TTGATGCCCA GCGCCAGCTG TACACCTCGG TGCGCGACTA CAACAATAGC CGTTACGACT ACATTCTCGA CAACCTGAGC CTGAAGCAGG CAGCCGGCAC CCTGAGCCCG CAAGACCTGC AGGACCTGAA GCGCTACCTG AAACCTGACT ACAACCCGGA CAAGGACTTC CTGCCGCCGG ACCTGGCGGC AGCAGCGGCC AAGAACTTCG AGCGCAGGCC TTGA
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Protein sequence | MLRKLSLAIA VSCASNGVVW AADVPSTVKT DLVSVYQEAV DNNADLAAAR ADYGARREVV PQARAGLLPN LSAGAEMMNT RTKLDEPSIT SNRSGNSWSA TLAQPIFRAD RWFQLQAAEA VNEQAALELS ATEQNLILQT AQNYFAVLRA QDNLAATKAE EAAFKRQLDQ SNERFDVGLS DKTDVLQSQA SYDTARANRI IAERQVQDAF EALVTLTNRE YTSIQGVVHS LPVQVPTPND AKAWVETAGR QNLNLLATNY AVSAAEETLR QRKAGHAPTL DAVAKYQKGD NDSLGFTNPS QLGVRYSGDV EQTSVGLQLN IPIYSGGLTS SQVREAYQRL SQSEQQRESL RRQVVENTRN LHRAVNTDVE QVQARKQSII SNQSALEATE IGYQVGTRNI VDVLDAQRQL YTSVRDYNNS RYDYILDNLS LKQAAGTLSP QDLQDLKRYL KPDYNPDKDF LPPDLAAAAA KNFERRP
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