Gene PP_4923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4923 
Symbol 
ID1041623 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5596495 
End bp5597928 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content63% 
IMG OID637148324 
ProductTolC family type I secretion outer membrane protein 
Protein accessionNP_747026 
Protein GI26991601 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCGCA AACTCTCACT GGCGATAGCC GTGTCTTGTG CGTCCAACGG AGTGGTCTGG 
GCAGCGGACG TGCCCTCGAC AGTCAAAACC GATCTGGTCA GCGTCTACCA GGAAGCAGTG
GACAACAACG CCGACCTGGC TGCAGCCCGC GCCGATTACG GGGCGCGCCG CGAAGTGGTG
CCGCAGGCCC GCGCCGGGTT GCTGCCAAAC CTGTCGGCCG GTGCCGAGAT GATGAACACC
CGCACCAAGC TGGACGAGCC ATCCATCACG TCCAATCGCA GCGGCAACTC CTGGAGCGCG
ACCCTGGCTC AGCCGATCTT CCGCGCTGAT CGCTGGTTCC AGTTGCAAGC CGCCGAAGCA
GTCAACGAAC AGGCAGCCCT GGAGCTGTCG GCGACCGAGC AAAACCTGAT CCTGCAAACC
GCGCAAAACT ACTTCGCCGT CCTCCGCGCC CAGGACAACC TGGCCGCCAC CAAGGCAGAA
GAAGCCGCCT TCAAGCGCCA GCTGGATCAG TCCAACGAGC GTTTCGACGT GGGCCTTTCG
GACAAGACCG ACGTGCTGCA ATCCCAAGCC AGTTATGACA CTGCACGGGC CAACCGGATC
ATCGCCGAAC GCCAGGTGCA GGATGCCTTC GAGGCCCTGG TGACCCTGAC CAACCGTGAG
TACACCTCTA TCCAGGGCGT GGTACATAGC CTGCCGGTAC AAGTGCCAAC GCCCAACGAT
GCCAAAGCCT GGGTCGAAAC CGCCGGGCGC CAGAACCTCA ACCTGCTGGC CACCAACTAC
GCGGTTTCTG CCGCAGAAGA GACCCTGCGT CAGCGCAAGG CCGGGCATGC ACCGACCCTG
GACGCCGTGG CCAAGTACCA GAAGGGTGAC AACGACAGCC TTGGCTTCAC CAACCCATCG
CAACTGGGGG TGCGCTACAG CGGCGACGTC GAGCAGACCA GCGTTGGCCT GCAACTGAAC
ATACCGATCT ACAGCGGCGG CCTGACCAGC TCGCAGGTAC GCGAGGCTTA CCAGCGCCTG
AGCCAGAGCG AGCAGCAGCG TGAAAGCCTG CGCCGCCAGG TCGTGGAAAA CACCCGCAAC
CTGCACCGCG CAGTGAACAC CGATGTGGAA CAGGTACAGG CGCGCAAACA GTCGATCATT
TCCAACCAGA GCGCGCTGGA AGCCACCGAA ATCGGCTACC AGGTCGGTAC CCGCAACATC
GTCGACGTGC TTGATGCCCA GCGCCAGCTG TACACCTCGG TGCGCGACTA CAACAATAGC
CGTTACGACT ACATTCTCGA CAACCTGAGC CTGAAGCAGG CAGCCGGCAC CCTGAGCCCG
CAAGACCTGC AGGACCTGAA GCGCTACCTG AAACCTGACT ACAACCCGGA CAAGGACTTC
CTGCCGCCGG ACCTGGCGGC AGCAGCGGCC AAGAACTTCG AGCGCAGGCC TTGA
 
Protein sequence
MLRKLSLAIA VSCASNGVVW AADVPSTVKT DLVSVYQEAV DNNADLAAAR ADYGARREVV 
PQARAGLLPN LSAGAEMMNT RTKLDEPSIT SNRSGNSWSA TLAQPIFRAD RWFQLQAAEA
VNEQAALELS ATEQNLILQT AQNYFAVLRA QDNLAATKAE EAAFKRQLDQ SNERFDVGLS
DKTDVLQSQA SYDTARANRI IAERQVQDAF EALVTLTNRE YTSIQGVVHS LPVQVPTPND
AKAWVETAGR QNLNLLATNY AVSAAEETLR QRKAGHAPTL DAVAKYQKGD NDSLGFTNPS
QLGVRYSGDV EQTSVGLQLN IPIYSGGLTS SQVREAYQRL SQSEQQRESL RRQVVENTRN
LHRAVNTDVE QVQARKQSII SNQSALEATE IGYQVGTRNI VDVLDAQRQL YTSVRDYNNS
RYDYILDNLS LKQAAGTLSP QDLQDLKRYL KPDYNPDKDF LPPDLAAAAA KNFERRP