| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4838 |
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| Symbol | oprC |
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| ID | 1041884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 5503048 |
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| End bp | 5505114 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637148239 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | NP_746943 |
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| Protein GI | 26991518 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.412488 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCT GCACCCCTGT TTTTGCCTTG TCCCTGCGTG GGACCATCGC CGCCCTGTGC
GGCTCGCTGC TCGCGCCCAT GGCCCTGGCC GCCGGCCCTG GCCATGAAGA CCATGTGCAC
GACGCACCCG AGTTGAGCCC GACGGTGATC ACCGCCGTGG CCCCGAGTTC GCCGCTGACT
GTGGTCACCA ACCCGAAAGA CCCGCGCCAG CCAGTGCCGG CCAGCGACGG CGCCGACTAC
CTGAAGACCA TCCCCGGCTT CTCGGCAATC CGTGCTGGCG GTACCAACGG CGACCCGGTA
TTGCGCGGCA TGTTCGGCTC GCGCCTGAAC ATCCTCACCA ACGGCGGCTT GATGCTTGGA
GCCTGCCCCA ATCGCATGGA CGCACCCACG TCCTATATCT CGCCAGAAAC CTACGACCGC
CTGACCGTGA TCAAAGGCCC GCAGAGCGTC ATCTGGGGGC CCGGCGGCTC GGCCGGCACC
ATCCTCTTCG AGCGCGAACC TGAGAAATTC GGCACCCTCG GCAGCCGCGT CAACGCAAGC
CTGCTGGCCG GCTCCAACGG CCGCTTCGAC AAGGTGCTGG ATGCCGCGGC CGGCAACAGT
CAGGGCTATG CCCGCTTCGT CGGCAACCAG TCACGCTCGG ACGACTACCA CGACGGCAAC
AAAGACACCG TGCCGTCGCG CTGGGAAAAG TGGAACGGCG ATGTCGCCCT CGGCTGGACA
CCCGACCAGG ACACCTTGCT GGAACTGACT GCCGGCAAGG GTGACGGCGA AGCCCGCTAC
GCCGGGCGCG GCATGGACGG CTCGCAGTTC AAGCGCGAAA GCCTGGGCCT GCGCTTTGAA
AAGTCCAACC TCGGCGAGGT GCTCGACAAG GTCGAGGCGC AGGTCTACTA CAACTACGCC
GACCATGTGA TGGACAACTA CAGCCTGCGC ACGCCGTCGG GTAGCGGCAT GATGGGCATG
CCGATGGTCA GCAACGTCGA CCGCCGCACC ATGGGCGCAC GCATCAAAGC CACCTGGCGC
TGGGCCGACG TGCAACTGAT CAGCGGCATC GACGCGCAAA CCAACGAACA TCGCCAGCGT
GGCGGTATGG GTGTGGACGC ACACAAGGGC AAGGCCTGGA CCAAGGACGC CGACTTCCAC
AACTACGGCG CCTTCAGCGA ACTGACCTGG TACGTCAGCG GTGAGGACCG CTTGATTACC
GGCGCCCGCC TGGACCGCGC CTCGGCGCGT GACTTCCGCA CAACCAGCGC CACCGAAGGC
GACACCCGTG CCGACACCTT GCCGAGCGGT TTCATCCGCT ACGAGCACGA CCTGGCAGCC
ATTCCGGCCA CCACCTACAT CGGTCTCGGC CATGCCCAGC GCTTCCCCGA CTACTGGGAG
CTGTTTTCAC CCAAGCTGGC ACCACCCGGG GCAGCCAATG CCTTCGACGG CATCAAGCCA
GAGAAAACCA CCCAGCTCGA CTTCGGCATC CAGTACCGCA CCGAGCGCCT GGAGGCCTGG
GCTTCGGGCT ATGTCGGGCA GATTCGCGAC TACATCCTGT TCGACTACCG CACCGGCATG
ATGGGCATGA GCACCTCCCA GGCGCAAAAC ATCGACGCCC GCATCATGGG TGGCGAACTG
GGCGCCGCCT ACCAGCTGAC TGACAACTGG AAGGCCGACG CCACGCTTGC CTACGCTTGG
GGCAAGAACA GCAGTGACGG CAAGGCGCTA CCTCAAATGC CTCCCCTGGA AAGCCGCCTG
GGCCTGACCT ACAGCCGCGA CGTGTGGAGC GTCGGCGCAC TGTGGCGGCT GGTGGCGGCG
CAAAACCGCA TTGCCGAAAA CCAAGGGAAC GTCGTCGGCA AGGACTACGA CAAGAGCGCC
GGCTTCGGCG TGTTCTCCCT GAACGGCGCC TACAAGGTGA ACAACAACCT CAAGCTCAGC
GCAGGGGTCG ACAACCTGTT CGACAAAACC TACGCCGAGC ACTTGAACCT GGCCGGGAAC
GCCGGGTTCG GCTACCCGGC TACAGATCCA CAGCCGGTCA ATGAGCCAGG CAGGACCTTC
TGGACCAAGG TCGACTTCAG CTTCTGA
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| Protein sequence | MSGCTPVFAL SLRGTIAALC GSLLAPMALA AGPGHEDHVH DAPELSPTVI TAVAPSSPLT
VVTNPKDPRQ PVPASDGADY LKTIPGFSAI RAGGTNGDPV LRGMFGSRLN ILTNGGLMLG
ACPNRMDAPT SYISPETYDR LTVIKGPQSV IWGPGGSAGT ILFEREPEKF GTLGSRVNAS
LLAGSNGRFD KVLDAAAGNS QGYARFVGNQ SRSDDYHDGN KDTVPSRWEK WNGDVALGWT
PDQDTLLELT AGKGDGEARY AGRGMDGSQF KRESLGLRFE KSNLGEVLDK VEAQVYYNYA
DHVMDNYSLR TPSGSGMMGM PMVSNVDRRT MGARIKATWR WADVQLISGI DAQTNEHRQR
GGMGVDAHKG KAWTKDADFH NYGAFSELTW YVSGEDRLIT GARLDRASAR DFRTTSATEG
DTRADTLPSG FIRYEHDLAA IPATTYIGLG HAQRFPDYWE LFSPKLAPPG AANAFDGIKP
EKTTQLDFGI QYRTERLEAW ASGYVGQIRD YILFDYRTGM MGMSTSQAQN IDARIMGGEL
GAAYQLTDNW KADATLAYAW GKNSSDGKAL PQMPPLESRL GLTYSRDVWS VGALWRLVAA
QNRIAENQGN VVGKDYDKSA GFGVFSLNGA YKVNNNLKLS AGVDNLFDKT YAEHLNLAGN
AGFGYPATDP QPVNEPGRTF WTKVDFSF
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