| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4788 |
|---|
| Symbol | |
|---|
| ID | 1046266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5450121 |
|---|
| End bp | 5450594 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637148189 |
|---|
| Product | putative metalloprotease |
|---|
| Protein accession | NP_746893 |
|---|
| Protein GI | 26991468 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0319] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | [TIGR00043] metalloprotein, YbeY/UPF0054 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.474537 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.075672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAAC TTGATATCCA ACGGGCCACG GATGCTGCCA CTCCAGAAGA CGCCGCCTTG
CGCCGCTGGT GCGAATTGGC GTTGCGCCAG CGCAGCGCCG ACTCGGAAAT GACCATTCGC
CTGGTCGACG AAGCCGAAGG CCGCGAGCTG AACCACACCT ACCGGCACAA GGACTACGCG
ACCAATGTGT TGTCGTTCCC GGCCGATGTG CCCGATGACC TGCTCGATAT CCCGCTGCTG
GGCGACCTGG TCATCTGTGT AGCGGTGGTC GAGCGCGAAG CGGCCGAACA AGGCAAATCG
CTGGAAGCGC ACTGGGCGCA CCTGGTCATC CACGGTTGCC TGCACTTGCT CGGCTACGAC
CACATCGAGG ATGAGGAAGC CGAGGAAATG GAAAGCCTGG AACGGGAATT GCTGGCAGAA
CTGGGTCACC CCGACCCGTA TGCCGATGAT GAAACCGACA CAATCACACA CTGA
|
|---|
| Protein sequence | MLELDIQRAT DAATPEDAAL RRWCELALRQ RSADSEMTIR LVDEAEGREL NHTYRHKDYA
TNVLSFPADV PDDLLDIPLL GDLVICVAVV EREAAEQGKS LEAHWAHLVI HGCLHLLGYD
HIEDEEAEEM ESLERELLAE LGHPDPYADD ETDTITH
|
|---|
| |