| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4742 |
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| Symbol | hsdS |
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| ID | 1042031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 5396987 |
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| End bp | 5398717 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637148146 |
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| Product | type I restriction-modification system, S subunit |
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| Protein accession | NP_746850 |
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| Protein GI | 26991425 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0732] Restriction endonuclease S subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.266617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00441093 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGGCGC TACTCATCGA CAACCTGCCG CTGCTGGCCG GTGCACCCAA TGGCATCAGA
AAGTTGCGCG AGCTGATTCT GGAACTGGCG GTGCGCGGTA AGTTGGTACC GCAAGAGCCT
AATGATGAGC CGGCCAGTGA GTTGCTAGCG CGAATTGCCT TAGAGAGTGC ACAGCTAGTG
GCGGGGGGTA AGGCAAAGAA AGGAAATGTT AAAGCTGGCG TAGTAGCGCA AGGTCTAGAC
AGCGCTGAAC TACCCACAAC TTGGATATGG ACATCGTTCG ATGATCTAAT AAATCCAGAA
TACCCAATCG CTTATGGGGT CCTTGTACCG GGGCCTGATG TAGCAGATGG AGTTCCTTTT
GTTCGAATTG CTGATCTTGA TTTGGTGGCA CCGCCACATA AGCCCGAAAA GTCAATAAGC
CCAGAAGTTG ACCGCCAATA TGAACGGACT CGCATTCGCG GCGGCGAAAT TCTTATGGGG
GTAGTTGGCA GCATCGGGAA ACTGGGTATT GCTCCTGAAA GCTGGGCCGG CGCCAACATT
GCCAGAGCTA TTTGCCGTGT AGTCCCCAGT GTGCATGTCT CGAAGGACTA CATAATTTGG
TTGCTACAAA GTGACCTTAT GCGAAAGCAG TTCTTGGGAG ATACTCGAAC CCTCGCCCAG
CCAACATTAA ATGTTGGCCT GATTCGTAGT GCCGCGGCAC CTCTGCCTCC CCTCGCCGAA
CAACACCGCA TCGTTGCCAA AGTCGAAGAA CTAATGGCCC TATGCGACCG CTTGGAAGCC
CAGCAGGCCG ACGCCGAGTC CGCCCACGTC CAACTGGTGC AGGCGATGCT CGACAGCCTG
ACCCAAGCCA TCGACGCCGC CGACTTCGCG ACCAGTTGGC AGCGCCTAGC CGAGCACTTT
CACACCCTGT TCACAAACGA GTTTGCCATC GACGCCCTCA AGAAAACCCT CTTGCAACTT
GCCGTGATGG GAAAGCTTGT CCCGCAAGAC GTTACTGACG AATCCGCCAG CGAACTGTTA
AAACGCATCG AGGGAGAAAA ACAGCGGTTG GTGAACGAAG GATTGATGAA AAAACAAAAG
CCATTGGTGG AAAGTACAAG CGGGCAAATC AAACCCGCAC TGCCTTCTTC GTGGAAATGG
GTACCTCTTT TAGACATAAC AACGGGTATG GATTCTGGAT GGAGCCCTGC ATGTCTTGGT
AATAGTTCGC CTTCTGATGA TGTGTGGGGG GTCCTCAAAA CAACAGCAGT TCAGGTAATG
AGCTATCTAC AACACGAAAA TAAAGAGCTA CCTAGCCACC TTGAACCTCG CCCTGAGGCA
GAGACTAAGG TCGGTGATAT ACTATTCACT CGGGCTGGCC CTATGAACCG CGTGGGAATT
TCTTGCCTCG TTGAAAGTAC GCGCCCGAAA TTAATGATTT CCGACAAGAT CATCAGGTTT
CATCCTGTTG AGCTGGGTGT TTATGGAAGG TTTGTCGCTC TTTGCTTGAA CGCTGGAGAA
ACTGCCAAAT ATCTCGAACA GGCCAAGTCC GGCATGGCTG CAAGTCAGGT CAATATCTCG
CAAGAAAAGC TGAGATTGGC TCCGATCCCG TTAGCACCGC TCCGCGAGCA ACACCGCATT
GTCACAAAGG TCGATCAGCT TATGAAACTA TGCGATACGC TAAAGCAACA GATAAATGTA
GCTCGCAGCA AGCAAACAGA GCTATTAGAT ACCCTTATGG CTCAGGTGTA G
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| Protein sequence | MTALLIDNLP LLAGAPNGIR KLRELILELA VRGKLVPQEP NDEPASELLA RIALESAQLV
AGGKAKKGNV KAGVVAQGLD SAELPTTWIW TSFDDLINPE YPIAYGVLVP GPDVADGVPF
VRIADLDLVA PPHKPEKSIS PEVDRQYERT RIRGGEILMG VVGSIGKLGI APESWAGANI
ARAICRVVPS VHVSKDYIIW LLQSDLMRKQ FLGDTRTLAQ PTLNVGLIRS AAAPLPPLAE
QHRIVAKVEE LMALCDRLEA QQADAESAHV QLVQAMLDSL TQAIDAADFA TSWQRLAEHF
HTLFTNEFAI DALKKTLLQL AVMGKLVPQD VTDESASELL KRIEGEKQRL VNEGLMKKQK
PLVESTSGQI KPALPSSWKW VPLLDITTGM DSGWSPACLG NSSPSDDVWG VLKTTAVQVM
SYLQHENKEL PSHLEPRPEA ETKVGDILFT RAGPMNRVGI SCLVESTRPK LMISDKIIRF
HPVELGVYGR FVALCLNAGE TAKYLEQAKS GMAASQVNIS QEKLRLAPIP LAPLREQHRI
VTKVDQLMKL CDTLKQQINV ARSKQTELLD TLMAQV
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