| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4740 |
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| Symbol | hsdR |
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| ID | 1043007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 5393057 |
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| End bp | 5395420 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637148144 |
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| Product | type I restriction-modification system, R subunit |
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| Protein accession | NP_746848 |
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| Protein GI | 26991423 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00141278 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAAGA AATCACTTTC CGAGCGGGAC ATCTGCAGCA AATACATCGC TCCAGCCATC
CAGCACGCTG GGTGGGACAT GCACAAACAG GTGCGTGAAG AGGTCAGCTT CACCAAAGGC
CGGATTATGG TCCGTGGCAA GCTTCACAGC CGGGGCGAAG CACGCCGTGC AGACTTCATC
CTCTACCACC AAGCCAACCT GCCTATCGCT GTGATCGAGG CGAAGGATAA CAAGCACTCC
GTTGGCTCCG GCATGCAGCA AGCGCTTGGC TATGCAGAGG CGTTGGATGT GCCGTTCGTG
TTCTCCAGCA ATGGCGATGG TTTTCTCTTT CATGATCGCA GTGGGACAGA CAGCAAGGTC
GAAACTGAAC TCTCCTTGGA TCAGTTCCCT AGTCCTGCCG AACTTTGGCA CCGCTACTGC
CAATGGAAGG GGTTGGACAA TGCTGTTCAA CACAAGATAG AAGCGCCCTA CTACGACGAC
GGCTCCGGAC GTATGCCGCG CTATTACCAA ATGAACGCCA TCAACCGCAC CGTTGAGGCG
GTAGCGCGCG GGCAAGACCG CGTTCTGCTG GTAATGGCAA CTGGCACCGG AAAAACCTAC
ACCGCCTTTC AAATCATCTG GCGACTGTGG AAATCGAAAC AGAAAAAAAG AATCCTGTTC
CTTGCCGACC GCAACATCCT GGTCGACCAG ACAAAGAACA ACGACTTTAA GCCCTTCGGC
CAGGCGATGA CCAAAATCGC CAGACGCCAG ATAGACACCT CCTACGAAAT CTACCTGTCG
CTCTATCAGG CGGTGACTGG TGCTGAAGAA GAGATGAACG TCTACAAGCA GTTCTCCCGC
GACTTCTTCG ACTTGATCGT GATCGACGAA TGCCACCGTG GCAGCGCCGC CGAGGACTCC
GCCTGGCGCG AGATTCTTGG CTACTTCTCC AACGCCACCC ATGTCGGCCT CACCGCAACA
CCGAAGGAAA CCAAAGAGGT GTCCAGCATC ACCTACTTCG GTGAGCCGGT GTACAGCTAC
ACCCTCAAAC AGGGCATCGA GGACGGTTTT CTCGCGCCCT ATAAAGTGGT GCGGATCGAC
TTCGACAAAG ACCTACAAGG CTGGCGCCCC CCCAAGGGTA TGCTCGACAA GAATGGCGAG
CTGATCGAAG ACCGCATCTA CAACCTCAAG GACATGGATC GCACTCTGGT CATCGAAACG
CGCACCCAAC TGGTGGCGCA GAAGGTCACC GAGTTCCTCA AGGCCTCCGA CCCGTTCCAG
AAAACCATCG TCTTCTGCGA CGATATCAAT CACGCCGAGC GTATGCGCCA GGCCTTGGTC
AACCTGAACC CCGAGCGCGT GGCTGAGAAC CGCAAGTACG TCATGCGCAT CACCGGCGAT
GATCAGGAAG GCAAGGCCGA GCTGGATAAC TTCATCAACC CGGAAGAGCG CTACCCGGTC
ATCGCCACCA CCAGCAAGCT GATGACCACC GGTGTCGATG CGCAGACTTG CAAGCTGATC
GTGCTCGACC AGCACATCAA GTCGATGACC GAGTTCAAGC AGATCATCGG CCGTGGCACC
CGCATCAATG AAGATTTCGG CAAATACTGG TTCACCATTA TGGACTTCAA GAAGGCCACC
GAGCTTTTTG CCGACCCAGC TTTCGACGGA GACCCAGTGG TGGTCTACGC CCCCGAAGGC
AACGAGCTAC CAGTCCCGCC CGACGATTTA CTTGAAGGCG ATGGCATCAG CGCAGGGAGT
GATGGAGAAA GCGATGATTT GGATTTTACC GGCGAGGAAG ACGGCAAGAA GCTCATCAAA
TACGTCATCG ACAGCATCCC GATCTATGTC ATCGCCGAGC GTGTCCAGTA CTACGGGCCG
GATGGCCGAC TGATCACCGA ATCGCTGCAC GACTACACCC GTACCTGCGT GCAAAAACAG
TTCGCCTCGC TGGACGACTT TCTGCGCCAT TGGAGTGATG CCGAGCAGAA AAAGGTCATC
ATCGACGAAA TGGCAGCCCA AGGCGTGATG TGGGAAGCCC TGGCCGAAGA AGTGGAAAAG
AAACAGGGCA AGCCACTCGA TCCGTTTGAC TTGATCTGCC ACGTCGCGTT CGACCAACCG
CCGCTGTCGC GTAAAGAACG CGCCGAACAA GTGAAAAAGC GTAACTACTT CGCCAAATAC
TCCGGTGCAG CGCGCCAGGT GCTGGAAGCG CTGCTGGATA AATACGCCGA CACCGGCATT
GAGCACATCG AGGACATCAA AATCCTCCAG CTCGATCCCT TTAACCAGCT CGGTGCACCC
ATCGAACTGG TTAAAGCCTT TGGCGGCAAA GCTGGCTACA ACAAAGCTAT CCATGAACTG
GAAGACGCGC TGTACGCCAG TTAA
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| Protein sequence | MDKKSLSERD ICSKYIAPAI QHAGWDMHKQ VREEVSFTKG RIMVRGKLHS RGEARRADFI
LYHQANLPIA VIEAKDNKHS VGSGMQQALG YAEALDVPFV FSSNGDGFLF HDRSGTDSKV
ETELSLDQFP SPAELWHRYC QWKGLDNAVQ HKIEAPYYDD GSGRMPRYYQ MNAINRTVEA
VARGQDRVLL VMATGTGKTY TAFQIIWRLW KSKQKKRILF LADRNILVDQ TKNNDFKPFG
QAMTKIARRQ IDTSYEIYLS LYQAVTGAEE EMNVYKQFSR DFFDLIVIDE CHRGSAAEDS
AWREILGYFS NATHVGLTAT PKETKEVSSI TYFGEPVYSY TLKQGIEDGF LAPYKVVRID
FDKDLQGWRP PKGMLDKNGE LIEDRIYNLK DMDRTLVIET RTQLVAQKVT EFLKASDPFQ
KTIVFCDDIN HAERMRQALV NLNPERVAEN RKYVMRITGD DQEGKAELDN FINPEERYPV
IATTSKLMTT GVDAQTCKLI VLDQHIKSMT EFKQIIGRGT RINEDFGKYW FTIMDFKKAT
ELFADPAFDG DPVVVYAPEG NELPVPPDDL LEGDGISAGS DGESDDLDFT GEEDGKKLIK
YVIDSIPIYV IAERVQYYGP DGRLITESLH DYTRTCVQKQ FASLDDFLRH WSDAEQKKVI
IDEMAAQGVM WEALAEEVEK KQGKPLDPFD LICHVAFDQP PLSRKERAEQ VKKRNYFAKY
SGAARQVLEA LLDKYADTGI EHIEDIKILQ LDPFNQLGAP IELVKAFGGK AGYNKAIHEL
EDALYAS
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