| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4735 |
|---|
| Symbol | lctP |
|---|
| ID | 1045884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5383535 |
|---|
| End bp | 5385205 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637148139 |
|---|
| Product | L-lactate transport |
|---|
| Protein accession | NP_746843 |
|---|
| Protein GI | 26991418 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1620] L-lactate permease |
|---|
| TIGRFAM ID | [TIGR00795] L-lactate transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.168353 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00377155 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACCT GGCAACAACT CTATAGCCCG CTTGGTAGTC TTGGCCTGTC CGCACTGGCG
GCGGTCATCC CTATCGTGTT CTTCTTCCTG GCCCTCGCCG TGTTCCGCCT CAAGGGCCAC
GTAGCGGGCA GCATCACCCT CGCGCTGTCG ATCCTGGTGG CGATCTTCGC CTTCCAGATG
CCTGTCGACA TGGCCCTCGC CGCCGCGGGT TACGGCTTCC TCTATGGCCT CTGGCCAATT
GCCTGGATCA TCGTTGCCGC GGTGTTCCTG TACAAACTCA CGGTCAAGAG CGGCCAGTTC
GAAGTGATCC GCAGCTCGGT GCTGTCGATT ACCGACGACC AGCGCCTGCA AGTGCTGTTG
ATCGGCTTCT GCTTCGGCGC CTTCCTCGAA GGTGCGGCAG GCTTTGGCGC ACCGGTGGCC
ATCACTGCCG CACTGCTGGT GGGCCTGGGC TTCAACCCGC TGTACGCTGC CGGCCTGTGC
CTGATCGCCA ACACCGCGCC AGTGGCCTTC GGCGCCCTGG GCATCCCGAT CATCGTGGCC
GGCCAGGTCA CCGGTATCGA CGCCTTCCAC ATCGGCGCCA TGACCGGCCG CCAGCTGCCG
CTGCTGTCGC TGTTCGTGCC GTTCTGGCTG GTGTTCATGA TGGACGGCCT GCGTGGCGTG
AAGGAAACCT GGCCTGCCGC CCTGGTCGCC GGCCTGAGCT TTGCCGTCAC CCAGTACTTC
ACCTCGAACT TCATCGGCCC GGAACTGCCA GACATCACCT CGGCACTGGC CAGCCTGATC
TGCCTTACCC TGTTCCTGAA AGTCTGGCAG CCCAAGCGTG CGTTCAGCGA GGCCAAAGGC
AGTGTCGGCG CAGCCGTTGT GCAGCCAAGC GGCAGCCAGC CTAGCCCGTA CAGCTTTGGC
GAGATCTTCA AGGCCTGGTC GCCGTTCCTG ATCCTCACCG TGCTGGTCAC CATCTGGACC
CTGAAGCCGT TCAAGGCGGC TTTCGCGCCG GGCGGCGCGA TGTACAACTT CGTGTTCAAC
TTCGCCATCC CGCACCTCGA CCAGCTGGTG ATCAAGACCG CACCGATCGT TGCCGCGCCG
ACCGCCATGC CGGCGGTGTT CAAGCTCGAC CCGATCTCCG CCACCGGCAC CGCGATCTTC
CTTTCGGCGC TGATCTCGAT GGCGGTGCTG AAGATCAACT TCAAAACTGG TCTTACCACT
TTCAAAGAAA CCTTCTGGGA ACTGCGCTGG CCGATTCTGT CGATCGGCAT GGTGTTGGCC
TTCGCCTTCG TCACCAACTA CTCGGGCATG TCCTCGACCA TGGCCCTGGT GCTGGCCGGT
ACCGGCGCCG CGTTCCCGTT CTTCTCGCCG TTCCTCGGCT GGCTGGGCGT GTTCCTGACC
GGCTCGGACA CCTCGTCCAA CGCCCTGTTC AGCTCGCTGC AGGCCACCAC CGCGCACCAG
ATCGGGGTCA ACGACACCCT GCTGGTGGCG GCCAACACCA GCGGCGGCGT AACCGGCAAG
ATGATCTCGC CGCAATCGAT CGCCGTGGCC TGCGCCGCTA CCGGCCTGGT CGGCAAGGAA
TCCGACCTGT TCCGCTTCAC CGTCAAGCAC AGCCTGTTCT TCGCCACCAT CGTCGGCCTG
ATCACCCTGG TCCAGGCTTA CTGGCTGACC GGCATGCTGG TTCATCACTA A
|
|---|
| Protein sequence | MQTWQQLYSP LGSLGLSALA AVIPIVFFFL ALAVFRLKGH VAGSITLALS ILVAIFAFQM
PVDMALAAAG YGFLYGLWPI AWIIVAAVFL YKLTVKSGQF EVIRSSVLSI TDDQRLQVLL
IGFCFGAFLE GAAGFGAPVA ITAALLVGLG FNPLYAAGLC LIANTAPVAF GALGIPIIVA
GQVTGIDAFH IGAMTGRQLP LLSLFVPFWL VFMMDGLRGV KETWPAALVA GLSFAVTQYF
TSNFIGPELP DITSALASLI CLTLFLKVWQ PKRAFSEAKG SVGAAVVQPS GSQPSPYSFG
EIFKAWSPFL ILTVLVTIWT LKPFKAAFAP GGAMYNFVFN FAIPHLDQLV IKTAPIVAAP
TAMPAVFKLD PISATGTAIF LSALISMAVL KINFKTGLTT FKETFWELRW PILSIGMVLA
FAFVTNYSGM SSTMALVLAG TGAAFPFFSP FLGWLGVFLT GSDTSSNALF SSLQATTAHQ
IGVNDTLLVA ANTSGGVTGK MISPQSIAVA CAATGLVGKE SDLFRFTVKH SLFFATIVGL
ITLVQAYWLT GMLVHH
|
|---|
| |