Gene PP_4369 details

Gene Information

• Locus tag: PP_4369
• Symbol: fliF
• ID: 1042454
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida KT2440
• Kingdom: Bacteria
• Replicon accession: NC_002947
• Strand: -
• Start bp: 4958691
• End bp: 4960469
• Gene Length: 1779 bp
• Protein Length: 592 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637147765
• Product: flagellar MS-ring protein
• Protein accession: NP_746483
• Protein GI: 26991058
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.443151
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.963228
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTGAAG CAGTCGTCGA AAACGCCCCC GCCAAAGCTG GCTCGCCAGC GGCCAAGCCG 
CCGCTGTTTG GCATGGCGTT TCTGGAAAAC ATCTCGCAGA TGCCCATGCT GCGCCAGATC 
GGCCTCCTGG TCGGCCTGGC GGCCAGCGTG GCCATCGGCT TTGCCGTGGT GCTGTGGTCG 
CAACAACCCG ATTACCGTCC GTTGTACGGC AGCCTGTCGG GCATGGACAC CAAGCAGGTC 
ATGGACACCC TGGCCGCTGC TGACATCCCC TATAACGTGG AGCCCAACTC GGGGGCCCTG 
CTGGTCAAGG CCGACGACCT CTCCCGTGCG CGCCTGAAAC TGGCAGCCGC CGGCGTGGCG 
CCGAGCGACG GCAATGTCGG CTTCGAACTG CTCGACAAGG AGCAGGGCCT GGGCACCAGC 
CAGTTCATGG AAGCCACCCG CTACCGCCGC AGCCTGGAAG GCGAACTGGC ACGTACCGTT 
TCCAGCCTCA ACAACGTCAA GGCCGCGCGC GTGCACCTGG CCATCCCGAA AAGTTCGGTG 
TTCGTGCGTG ATGAACGCAA GCCCAGCGCC TCGGTACTGG TCGAGCTGTA CCCAGGCCGT 
GCACTGGAAG CCGGGCAGGT GATGGCCATC GTCAACCTGG TCGCCACCAG CGTGCCGGAA 
CTGGACAAAT CCCAGGTCAC CGTCGTCGAC CAGAAGGGCA ACCTGCTGTC CGAGCAGATT 
CAGGATTCCG CGCTGACCCA GGCCGGCAAG CAGTTCGACT ACAGCCGCCG GGTGGAAAGC 
ATGCTCACCC AGCGTGTGCA CAACATTCTG CAGCCGGTGT TGGGCAACGA CCGCTACAAG 
GCCGAAGTGT CCGCCGACCT CGACTTCAGC GCGGTCGAGT CCACCTCCGA ACAGTTCAAC 
CCCGACCAGC CGGCGTTGCG CAGCGAGCAG TCGGTCGACG AACAACGTGC CAGCAGCCAA 
GGCCCGCAAG GTGTGCCTGG CGCGCTGAGC AACCAGCCGC CAGGCGCCGC TTCGGCACCG 
CAGACCACTG GTGGCGCGGC TACCCCGGCT GCTGCCATTC AGCCTGGCCA GCCGCTGGTG 
GATGCCAACG GCCAGCAGAT CATGGACCCG GCCACCGGTC AGCCGATGCT CGCGCCGTAC 
CCGTCAGACA AACGTCAGCA AAGCACCAAG AATTTCGAGC TGGACCGTTC CATCAGCCAC 
ACCCGCCAGC AGCAGGGGCG CATGGCCCGC CTGTCGGTAG CGGTGGTGGT GGACGACCAG 
GTCAAGATCG ACCCGGCCAC AGGCGATACC ACGCGGGCAC CGTGGGGTGC CGAGGACCTG 
GCGCGCTTTA CCCGCCTGGT GCAGGACGCA GTCGGCTTCG ATGCCAGCCG TGGCGACAGC 
GTGACGGTGA TCAACGTGCC GTTCGCCGCC GACCGTGGCG AGGAAATCGC CGACATCGCC 
TTCTACCAGC AGCCGTGGTT CTGGGATATC GTCAAACAGG TGCTGGGCGT GGTGTTCATC 
CTGGTGCTGG TGTTCGGCGT GCTGCGGCCA GTGCTGAACA ACATTACCGG GGGCGGCAAG 
CAGGCTGCCC CGGACAGCGA CATGGAGCTG GGCGGCATGA TGGGTCTGGA TGGCGAACTG 
GCCAACGACC GCGTCAGCCT GGGTGGCCCG ACAAGCATTC TGCTGCCTAG CCCGAGCGAG 
GGTTACGAGG CACAGCTCAA CGCAATCAAA GGCCTGGTGG CCGAAGACCC GGGCCGTGTG 
GCTCAGGTCG TGAAAGACTG GATCAACGCC GATGAGTGA 

 

Protein sequence

MAEAVVENAP AKAGSPAAKP PLFGMAFLEN ISQMPMLRQI GLLVGLAASV AIGFAVVLWS 
QQPDYRPLYG SLSGMDTKQV MDTLAAADIP YNVEPNSGAL LVKADDLSRA RLKLAAAGVA 
PSDGNVGFEL LDKEQGLGTS QFMEATRYRR SLEGELARTV SSLNNVKAAR VHLAIPKSSV 
FVRDERKPSA SVLVELYPGR ALEAGQVMAI VNLVATSVPE LDKSQVTVVD QKGNLLSEQI 
QDSALTQAGK QFDYSRRVES MLTQRVHNIL QPVLGNDRYK AEVSADLDFS AVESTSEQFN 
PDQPALRSEQ SVDEQRASSQ GPQGVPGALS NQPPGAASAP QTTGGAATPA AAIQPGQPLV 
DANGQQIMDP ATGQPMLAPY PSDKRQQSTK NFELDRSISH TRQQQGRMAR LSVAVVVDDQ 
VKIDPATGDT TRAPWGAEDL ARFTRLVQDA VGFDASRGDS VTVINVPFAA DRGEEIADIA 
FYQQPWFWDI VKQVLGVVFI LVLVFGVLRP VLNNITGGGK QAAPDSDMEL GGMMGLDGEL 
ANDRVSLGGP TSILLPSPSE GYEAQLNAIK GLVAEDPGRV AQVVKDWINA DE