| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4278 |
|---|
| Symbol | xdhA |
|---|
| ID | 1045211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4866803 |
|---|
| End bp | 4868257 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637147676 |
|---|
| Product | xanthine dehydrogenase, XdhA subunit |
|---|
| Protein accession | NP_746394 |
|---|
| Protein GI | 26990969 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG4630] Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A |
|---|
| TIGRFAM ID | [TIGR02963] xanthine dehydrogenase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.513605 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCCAGT TTCTCGTCAA CCAGGAGCTG CGTAGTGAGC ACGCCCTGGA CCCTAACATG
ACGGTGCTGC AGTACCTGCG CGAGCACCTG GGCAAAACCG GCACCAAGGA GGGCTGCGCC
AGTGGAGACT GCGGCGCTTG CACCGTGGTG GTCGGCGAAC TGATCCAGGA CGACCAGGGT
AACGACAGCC TGCGCTACCG CAGCCTCAAT TCGTGCCTGA CCTTTGTGTC GTCGCTGCAC
GGCAAGCAAC TGATCAGCGT CGAGGGGCTC AAACAACAGG GTCAACTGCA CAGCGTTCAG
CAAGCGATGG CGGACTGCCA CGGATCGCAA TGCGGCTTCT GCACGCCCGG CTTCGTCATG
TCACTGTTTG CCCTGCAAAA GAACAGCAGC GGCCCCGACC TGCATCAGGC CCAGGAAGCC
CTGGCTGGCA ACCTGTGCCG CTGCACCGGT TACCGACCGA TCCTCGACGC CGCCGAGCAG
AGCTGCCGCC AGCCCTGCCG CGACCAGTTC GATACCCAGC AGGCGCAAAC CATCAGCCGC
CTCAAGGCCA TTGCCCCGAC CCAGACCGGC GAGCTGAACA GCGGCGACAA GCGCTGCCTG
GTGCCGCTGA CCGTGGCGGA TCTGGCCGAC CTGTACAGCT CGCACCCCGA AGCGCGACTG
CTGGCCGGTG GTACCGACCT GGCGCTGGAA GTCACCCAGT TCCACAAGAC CTTGCCGGTG
ATGATCTACG TTGGCCATGT GGCAGAACTC AAGCGCATCG AGAAAACCGC CAGCCACCTG
GAGATCGGCG CCGCCACGCC ACTGACTGAC TGCTACGCCG CGCTGAACGA GGAGTACCCT
GACTTCGGGG CACTGCTGCA CCGCTTCGCC TCGCTGCAGA TCCGCAACCA GGGCACCCTC
GGCGGCAACA TCGGCAACGC CTCGCCAATC GGCGACTCGC CACCCCTGCT GATCGCCCTG
GACGCGCAGG TGGTGCTGCG CCAGGGTGAA CGCCAACGGG TGATGCCGCT GGAAGACTAC
TTCATCGACT ACCGCATCAC GGCTCGCCAG GACAGCGAGT TCATCGAGAA GATCATCGTA
CCGCGCGCCT CCAATGACTG GGCGTTCCGC GCCTATAAAG TGTCCAAGCG CCTGGACGAT
GACATCTCCG CCGTGTGCGC AGCCTTCAAC CTGAGCATCG AAGACGGTGT GGTCAGCGGT
GTGCGTATCG CCTTCGGCGG CATGGCGGCG ATTCCCAAGC GCGCCCGCGC CTGTGAGGCG
GCGCTGCGCG GCAAGCCGTG GGACCAGGCT GCCATCGAGC GCGCCTGCCA GGCCCTGGCC
GAGGACTTCA CCCCGCTCAG CGACTTCCGC GCCAGCAAGG AATACCGCCT GCTGACCGCG
CAGAACCTGC TGCGCAAGTA TTTCATCGAA CAGCAAACAC CGTACATCGA AACCCGGGTG
ACCGCTTATG TCTAA
|
|---|
| Protein sequence | MIQFLVNQEL RSEHALDPNM TVLQYLREHL GKTGTKEGCA SGDCGACTVV VGELIQDDQG
NDSLRYRSLN SCLTFVSSLH GKQLISVEGL KQQGQLHSVQ QAMADCHGSQ CGFCTPGFVM
SLFALQKNSS GPDLHQAQEA LAGNLCRCTG YRPILDAAEQ SCRQPCRDQF DTQQAQTISR
LKAIAPTQTG ELNSGDKRCL VPLTVADLAD LYSSHPEARL LAGGTDLALE VTQFHKTLPV
MIYVGHVAEL KRIEKTASHL EIGAATPLTD CYAALNEEYP DFGALLHRFA SLQIRNQGTL
GGNIGNASPI GDSPPLLIAL DAQVVLRQGE RQRVMPLEDY FIDYRITARQ DSEFIEKIIV
PRASNDWAFR AYKVSKRLDD DISAVCAAFN LSIEDGVVSG VRIAFGGMAA IPKRARACEA
ALRGKPWDQA AIERACQALA EDFTPLSDFR ASKEYRLLTA QNLLRKYFIE QQTPYIETRV
TAYV
|
|---|
| |