Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4209 |
Symbol | |
ID | 1042499 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 4753581 |
End bp | 4754759 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637147608 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | NP_746326 |
Protein GI | 26990901 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.122721 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGACGCT CAACCCACAC TCGCCGTCGC CTCCTCCTCG GCGGCCTGGG CCTGCTTGGC CTTGGCAGCC TGCTGGCCTG GACATCTCTG CCGTTCGGCG CGCAGCCGGT CAGTACCGTT GCCGTTACCC GCGCCGACAT CGAGAGCAGC GTAACAGCGC TGGGCACGCT GCAGCCGCGG CGCTACGTAG ACGTCGGTGC ACAAGCCTCC GGGCAGATCC GCAACCTGCA CGTCGAGGTT GGTGATCAAG TCCACAAAGG GCAGTTGCTG GTCGAGATCG ACCCCTCCAC GCAGCAGGCC AAGCTCGATG CCGGGCGCTT CTCGATCGAT AATCTCAAGG CGCAGCTGGC AGAGCAGCGC GCCCAGCTCA AACTCGCCCA ACAGCAGCTC AAGCGCCAGC GCGACCTGGC AGCGGTCGGC GCCACACGCG AAGAAGACCT GCAAACGGCC GAAGCCCAGC TCAACGTGAC CCAGGCACGC ATCGACATGT ACCAGGCCCA GATCCGCCAG GCCAACGCCA GCTTGCGCAG CGACGAAGCC GAACTGGGCT ACACACGCAT CTTCGCCCCT ATGGACGGCA CGGTAGTGGC AGTGGATGCC CGTGAAGGCC AGACCCTCAA CGCCCAGCAA CAAACGCCGC TGATCCTGCG CATCGCCAAG CTGTCCCCCA TGACCGTCTG GGCCCAGGTC TCGGAGGCCG ATATCGGCAA GATCCAGCCT GGCATGACCG CCTACTTCAC CACCCTGGCC GGCGGCAAGC GCCGCTGGAC CAGCACCGTG CGCCAGGTGC TGCCCATTCC GCCCAAGCCA CTGGACCAGA CCAGCCAGGG CGGCGGCAGC CCAGCCAGCG CCACCGCCGG CGCCACCGGC AGCCAAGTCG TGCAATACAC CGTGCTGCTG GACGTGGACA ACCCCGATGG CGCCCTCATG GCAGAGATGA CCACCCAGGT GTTTTTCGTC GTCGGCCAAG CCAGCCAGGT GCTTAGTGCC CCGTTGGCCG CACTGGACGA TAGCGACAAC GAAGGCCTAC GCCTGGCCCA GGTTTTCGGC CGCGACGGCA AGGTCGAACA GCGCAAGGTG CGCACCGGTC TGAGCGACCG CTTGCGGGTG CAGATCCTAG ATGGCCTCAG TGAAGGTGAT CGACTGGTCA TCGGCGCCCC TGCCGCCAGC GGAGGTTGA
|
Protein sequence | MRRSTHTRRR LLLGGLGLLG LGSLLAWTSL PFGAQPVSTV AVTRADIESS VTALGTLQPR RYVDVGAQAS GQIRNLHVEV GDQVHKGQLL VEIDPSTQQA KLDAGRFSID NLKAQLAEQR AQLKLAQQQL KRQRDLAAVG ATREEDLQTA EAQLNVTQAR IDMYQAQIRQ ANASLRSDEA ELGYTRIFAP MDGTVVAVDA REGQTLNAQQ QTPLILRIAK LSPMTVWAQV SEADIGKIQP GMTAYFTTLA GGKRRWTSTV RQVLPIPPKP LDQTSQGGGS PASATAGATG SQVVQYTVLL DVDNPDGALM AEMTTQVFFV VGQASQVLSA PLAALDDSDN EGLRLAQVFG RDGKVEQRKV RTGLSDRLRV QILDGLSEGD RLVIGAPAAS GG
|
| |