Gene PP_4209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4209 
Symbol 
ID1042499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4753581 
End bp4754759 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content66% 
IMG OID637147608 
Productefflux transporter, RND family, MFP subunit 
Protein accessionNP_746326 
Protein GI26990901 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.122721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACGCT CAACCCACAC TCGCCGTCGC CTCCTCCTCG GCGGCCTGGG CCTGCTTGGC 
CTTGGCAGCC TGCTGGCCTG GACATCTCTG CCGTTCGGCG CGCAGCCGGT CAGTACCGTT
GCCGTTACCC GCGCCGACAT CGAGAGCAGC GTAACAGCGC TGGGCACGCT GCAGCCGCGG
CGCTACGTAG ACGTCGGTGC ACAAGCCTCC GGGCAGATCC GCAACCTGCA CGTCGAGGTT
GGTGATCAAG TCCACAAAGG GCAGTTGCTG GTCGAGATCG ACCCCTCCAC GCAGCAGGCC
AAGCTCGATG CCGGGCGCTT CTCGATCGAT AATCTCAAGG CGCAGCTGGC AGAGCAGCGC
GCCCAGCTCA AACTCGCCCA ACAGCAGCTC AAGCGCCAGC GCGACCTGGC AGCGGTCGGC
GCCACACGCG AAGAAGACCT GCAAACGGCC GAAGCCCAGC TCAACGTGAC CCAGGCACGC
ATCGACATGT ACCAGGCCCA GATCCGCCAG GCCAACGCCA GCTTGCGCAG CGACGAAGCC
GAACTGGGCT ACACACGCAT CTTCGCCCCT ATGGACGGCA CGGTAGTGGC AGTGGATGCC
CGTGAAGGCC AGACCCTCAA CGCCCAGCAA CAAACGCCGC TGATCCTGCG CATCGCCAAG
CTGTCCCCCA TGACCGTCTG GGCCCAGGTC TCGGAGGCCG ATATCGGCAA GATCCAGCCT
GGCATGACCG CCTACTTCAC CACCCTGGCC GGCGGCAAGC GCCGCTGGAC CAGCACCGTG
CGCCAGGTGC TGCCCATTCC GCCCAAGCCA CTGGACCAGA CCAGCCAGGG CGGCGGCAGC
CCAGCCAGCG CCACCGCCGG CGCCACCGGC AGCCAAGTCG TGCAATACAC CGTGCTGCTG
GACGTGGACA ACCCCGATGG CGCCCTCATG GCAGAGATGA CCACCCAGGT GTTTTTCGTC
GTCGGCCAAG CCAGCCAGGT GCTTAGTGCC CCGTTGGCCG CACTGGACGA TAGCGACAAC
GAAGGCCTAC GCCTGGCCCA GGTTTTCGGC CGCGACGGCA AGGTCGAACA GCGCAAGGTG
CGCACCGGTC TGAGCGACCG CTTGCGGGTG CAGATCCTAG ATGGCCTCAG TGAAGGTGAT
CGACTGGTCA TCGGCGCCCC TGCCGCCAGC GGAGGTTGA
 
Protein sequence
MRRSTHTRRR LLLGGLGLLG LGSLLAWTSL PFGAQPVSTV AVTRADIESS VTALGTLQPR 
RYVDVGAQAS GQIRNLHVEV GDQVHKGQLL VEIDPSTQQA KLDAGRFSID NLKAQLAEQR
AQLKLAQQQL KRQRDLAAVG ATREEDLQTA EAQLNVTQAR IDMYQAQIRQ ANASLRSDEA
ELGYTRIFAP MDGTVVAVDA REGQTLNAQQ QTPLILRIAK LSPMTVWAQV SEADIGKIQP
GMTAYFTTLA GGKRRWTSTV RQVLPIPPKP LDQTSQGGGS PASATAGATG SQVVQYTVLL
DVDNPDGALM AEMTTQVFFV VGQASQVLSA PLAALDDSDN EGLRLAQVFG RDGKVEQRKV
RTGLSDRLRV QILDGLSEGD RLVIGAPAAS GG