| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4081 |
|---|
| Symbol | |
|---|
| ID | 1042180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4609454 |
|---|
| End bp | 4610386 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637147487 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_746206 |
|---|
| Protein GI | 26990781 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.767126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000110004 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGCAGGTGA GTTCCCAGGG CTTGAACTGC AGTTCTGGGC GATCAGGGGT GAATGATATG
GAAAACAGTA ACCCTACCCT CAACGACGCG AAGCACGTTG CGGAAACGGA TTTGCAGTCG
ATGCTTGAGA AGTCGTTGCC CAACGACGCA CCCGCAGCTG CAGCTGCAGC TTCCACTGCA
TCTGCACAGG AGCAGAAGCC GGAACCTGCC TATCAGGGCT ACCCCGCGGA CCCGGAGTTT
CAGCTCAGGG GTGGCTGCGC CAATCTCATG CTGGATGCTG CGGCACCCTT GTTCGGGCTG
GTAATGCGCC TGCGCACGCT CGATGAACTG CCCAACATCA AAGATGTGCA TCAGCAAGTG
CGTATTCAGA TCGACAGCAT CCGGGAAGAA ATACGCCAGC ACGGCTATGA GCCCGCTCAG
TTGCTGGCGT ACTCCTACGG CCTGTGCCTG TACATCGATG AAGCGGTGAT GGAGCGGCCC
TGGGGCAAAA GCAGTTGCTG GAGCCACGAG CCGCTGCTCA GCATCTTCCA CGACGAGACC
TGGGGTGGGG AAAAAATCTT CACCGTGATT ACCCGCCTGA TGCAGGAGCC CAAGCGTTAT
CAGGACGTAC TGGAGTTCAT GTACTTCGCC CTGTGCCTTG GGCTGAAGGG CAAGTATGCG
CTCGCGCCGA AAGGCGAAGA AACACTCAAC GCACTGATTC ACCAACTGCA CGGGATCATC
CGCGAACTGC GCGGCCCCAC CCCCGAAGAA GTCTGCGACC CCTACACCAA CGTCGCCCCC
AGAAACTTCC GCATGAGCCG GATATGGCCG TGGTGGAGCC CGTTGGTCAT CTCCGCCATC
GCCATGGCGG TGGCCTACGG GATTTACAGC TACCGCCTGC ACCTGATCAC AACCGAGGTG
CTGGAGTCGC TGAACGGCAT TTTGCAGCAA TAG
|
|---|
| Protein sequence | MQVSSQGLNC SSGRSGVNDM ENSNPTLNDA KHVAETDLQS MLEKSLPNDA PAAAAAASTA
SAQEQKPEPA YQGYPADPEF QLRGGCANLM LDAAAPLFGL VMRLRTLDEL PNIKDVHQQV
RIQIDSIREE IRQHGYEPAQ LLAYSYGLCL YIDEAVMERP WGKSSCWSHE PLLSIFHDET
WGGEKIFTVI TRLMQEPKRY QDVLEFMYFA LCLGLKGKYA LAPKGEETLN ALIHQLHGII
RELRGPTPEE VCDPYTNVAP RNFRMSRIWP WWSPLVISAI AMAVAYGIYS YRLHLITTEV
LESLNGILQQ
|
|---|
| |