| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4049 |
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| Symbol | vgrG-3 |
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| ID | 1041595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4561542 |
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| End bp | 4563857 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637147456 |
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| Product | vgrG protein |
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| Protein accession | NP_746175 |
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| Protein GI | 26990750 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.253476 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGT CCGACTTTCG CTTCAGTTTT CAGGCGCTCG CCGGGCGCAC GGAATTTGAA
GTGGTTTCAT TCAAGCTGGA TGAAACCCTC AACCAGCCAT TTGTGCTGAA CCTGGAACTT
GTGAGCTACG AAAGTGATAT CGATTTCGGC CACGTCCTCG ACAAGCCTGC GCTATTCACC
CTTTACAGCG CAGACCGGCC ACTGCGTCAT GTGCATGGCC TAGTCAGTGC CTTCAGCCAG
GGCGAAACCG GCTTTTGTCG CACGCGCTAC CACGCCGTGG TCGAGCCGCA GCTGGCCCGC
GCGCGGTTGC GTTCGAACTG GCGGATCTTT CAGCAGAAAA CCGTGCCGCA GATTCTTGAA
CTCATGTTCA AGCGTCAGGG CATCACCCGC TTTGAGCTGA AAAGCAGCGC GCAGCACCAA
GTGCGGGAGT TTTGTGTTCA GGCGGGTGAA ACCGACCTCG ACTTCATCCA TCGCCTTGCC
GCTGAAGAGG GGTTCGTCTA CCGCTTCGAA CACTGCGCCC GGCAGCACAC GCTGATCGTT
ACCGACCGCT TGCTGTCGTT TGGGCTGCTC AGCCGGGGCG CGCTTAAGGC AGAGGACGAC
GAGGCGCTTT GGCTGGATGA GGATGATGTC GGCCCCGACA AGGTGCTGTA CCACGCCAGC
AGTGGTGGCG ACCAGGCCCG CGCATGCCTG CGGCGCTTGC GCTATTGCGA GCAGGTACGT
ACTGCGCGGC AAGTGCAGCG CGACTACACC TTCACCAACC CGGCCTACCG GCAGGAGCAC
AAGGCCCAGA CCAGTGGCGT CACGCACCAG TCACTGGACT ACGAGCGCTT TGATTACCCG
GGGCGCTACA AGCGCGATGC GGTGGGCAAG CCCTTCACTG AAACACGGCT GACGGCGCTG
CGCCACGACG CATGCCTGGC TGAAGTGCAG GGCGACGATG TGCGCCTGCA GACAGGCCTG
AGCTTCACCC TCGTCGGCCA CCCGCGGGAA GACCTCAATG TTCACTGGCG CGTGATCAGC
CTGTGTCACG AAGGTACCCA GCTCACCAGC CTGCAGGAAG AAGCGGCTGG CGCTGAACAA
GGCACCCGCT ACGTGAACGA TGCGTTGCTG GTGCAGGGCA TGGCCGAGTG GCGCCCGGCC
CCCATGGCCA AGCCGCGCAT TGATGGCCCA CACATGGCCA CCGTGGTCGG CCCGCCTGGG
GAGGAGATCT ATTGCGACGA ATGGGGGCGG GTCAAGGTCA GCTTCCCGTG GGACCGGGAG
AGCAAGAACA ACGAGTTCAG CTCCTGCTGG GTATGGGTGT CGCAAGGCTG GGCCGGTGGC
AGCTGGGGTT CGATGGCCAT CCCGCGTATC GGCCAGGATG TGATTGTCCA GTACGTCAAT
GGCGACCCCG ACCAGCCAAT GATCACCGGG CGCACCTACT GCGGTGACCA GCTGCCGCCG
TACGACCTTC CGGATCACAA GACCCGCATG ACCATCAAGA GCCAGACCCA TAAAGGCGAT
GGCTTCAACG AGTTGCGCTT CGAAGACGAG CTGGGGCGGC AGGAAGTGTT CATACATGCC
GAGCGCGACC AGAACAATGT TGTGAAACAC AACGAAACCA CGCTCATTGG CAATGACCGT
AGCGAACGCG TCGAGCATGA CGAAGTGGTG GACATCGGCG GCAACCGCAG CGTCAAGGTT
GGCGCCAGCA AGCGCGAAAC GGTCGCCCTT GGCAAAGTTG AAAGCATTGG CCTGGGCAAG
TCGCTGGCCG TTGGCGGTGC GCTAAGTGTC ATGGTCGGCC TTGAGGCCAC CGAGCAGGTC
GCGCTGGACA AGCGCGTGCA GGTCGGCGGG CAACTGCGGG TCGACGCCGA TGAGGATGTG
TCGATCACCA GTCATCACGG CCATGTGCAT ATCGACAGCC GAACGTCGCT GACCCTGAGC
TGCGGCGGGG CCTTTATCAA GCTGAGCGAT GGCCGCATCG AAATCGGTTG CCCCGAACCA
CTGCTGTTAC ACGCCATCGC CCAGGTCAAG GCGCCTGCAC GTTACGGAGT ACCGCCTGCA
CCTGAGCAGG ACGAAATCGA GTTTCGCCTG GTGCATGCCG ACGGTACGCC GATTGCGGGC
ACGGCCTACG TGGCAACGTT GTCCGATGGC ACCCAGCGCC AGGGCGTGGT CGACCAGAAC
GGCTATGCCC GCCTGGCTGG CGTCACTCCC GGTTGCAGCG CCCAAGTGCG CTACGAAGTT
GGCCCGGGCC CGCTGCAGCT GACGACTGCA ACCGAGCTGG ATGCTGCCTT GCAGGCATTG
CTTGCCGGCT GCACCTCAGC AGGTGGCCAG CCATGA
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| Protein sequence | MKQSDFRFSF QALAGRTEFE VVSFKLDETL NQPFVLNLEL VSYESDIDFG HVLDKPALFT
LYSADRPLRH VHGLVSAFSQ GETGFCRTRY HAVVEPQLAR ARLRSNWRIF QQKTVPQILE
LMFKRQGITR FELKSSAQHQ VREFCVQAGE TDLDFIHRLA AEEGFVYRFE HCARQHTLIV
TDRLLSFGLL SRGALKAEDD EALWLDEDDV GPDKVLYHAS SGGDQARACL RRLRYCEQVR
TARQVQRDYT FTNPAYRQEH KAQTSGVTHQ SLDYERFDYP GRYKRDAVGK PFTETRLTAL
RHDACLAEVQ GDDVRLQTGL SFTLVGHPRE DLNVHWRVIS LCHEGTQLTS LQEEAAGAEQ
GTRYVNDALL VQGMAEWRPA PMAKPRIDGP HMATVVGPPG EEIYCDEWGR VKVSFPWDRE
SKNNEFSSCW VWVSQGWAGG SWGSMAIPRI GQDVIVQYVN GDPDQPMITG RTYCGDQLPP
YDLPDHKTRM TIKSQTHKGD GFNELRFEDE LGRQEVFIHA ERDQNNVVKH NETTLIGNDR
SERVEHDEVV DIGGNRSVKV GASKRETVAL GKVESIGLGK SLAVGGALSV MVGLEATEQV
ALDKRVQVGG QLRVDADEDV SITSHHGHVH IDSRTSLTLS CGGAFIKLSD GRIEIGCPEP
LLLHAIAQVK APARYGVPPA PEQDEIEFRL VHADGTPIAG TAYVATLSDG TQRQGVVDQN
GYARLAGVTP GCSAQVRYEV GPGPLQLTTA TELDAALQAL LAGCTSAGGQ P
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