Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4014 |
Symbol | mnmA |
ID | 1046544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 4525068 |
End bp | 4526192 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637147425 |
Product | tRNA-specific 2-thiouridylase MnmA |
Protein accession | NP_746144 |
Protein GI | 26990719 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.152317 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.181813 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGCC CAGCACTTAA AGACCCCGCC AAGACCCGCG TCATCGTCGG CATGTCCGGC GGCGTGGACT CTTCCGTCTC AGCCCTTCTG CTCATCGAGC AGGGCTACCA GGTGGAAGGG CTGTTCATGA AGAACTGGGA AGAGGACGAC GGCACCGAAT ACTGCACCGC CCGTGAAGAC CTGGCCGACG CCCAGGCCGT GTGCGACCGT ATCGGCATCA AGCTGCACAC CGCCAACTTC GCCGCCGAAT ACTGGGACAA CGTGTTCGAG CACTTCCTTG AGGAGTACAA GGCCGGCCGC ACACCCAACC CCGACATCCT CTGCAACCGC GAAATCAAGT TCAAGGCGTT CCTCGACTAC GCCCTGTCGC TGGGTGCCGA CCTGATCGCC ACCGGCCACT ATGTGCGCCG CCGCGATACT GGCGCGCTCA CCGAACTGCT CAAGGGCCTG GACCCGAACA AGGACCAGAG CTACTTCCTG CACGCCGTCG GCGGCCAGGA AATCGCCCGC ACACTGTTCC CGGTCGGCGA ACTGGAAAAG CCCGAAGTAC GCGCCATCGC CGAAAAACAC GGCCTGGCCA CCGCCAAGAA GAAAGATTCC ACCGGCATCT GCTTCATTGG CGAGCGCCGC TTCAGCGACT TCCTCAAGCA GTACCTGCCG GCCCAGCCGG GCGACATCGA AACCACCGAA GGTGAAGTGA TCGGCCGCCA CCATGGCCTG ATGTACCACA CCATCGGCCA GCGCCAGGGC CTGGGCATTG GCGGCCTGAA GGATGCCAGT GACGAGCCGT GGTACGTGCT GCACAAGGAC CTGGCCCGCA ACGTGCTGGT GGTCGGCCAG GGCAACGAGC ACCCATGGCT GTTCTCCCGC GCCCTGCTGG CCTCGGAAAT TTTCTGGGTC AACCCGGTCG ACCTCGGCAG CCCACGGCAG TTGACTGCCA AGGTGCGCTA CCGCCAGAGC GACCAGCGAT GCACCCTGGA ACGCACCGCC AGCGGCTACC GCGCCGTGTT CGACGAGCCT CAGCGCGCCG TGACGCCGGG CCAGTCGGTG GTGTTCTACG ACGGCGAAGT GTGCCTGGGC GGCGGCGTGA TCGAGGCTGC CGAGCCGTGG AGCCCGCGCG CATGA
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Protein sequence | MTSPALKDPA KTRVIVGMSG GVDSSVSALL LIEQGYQVEG LFMKNWEEDD GTEYCTARED LADAQAVCDR IGIKLHTANF AAEYWDNVFE HFLEEYKAGR TPNPDILCNR EIKFKAFLDY ALSLGADLIA TGHYVRRRDT GALTELLKGL DPNKDQSYFL HAVGGQEIAR TLFPVGELEK PEVRAIAEKH GLATAKKKDS TGICFIGERR FSDFLKQYLP AQPGDIETTE GEVIGRHHGL MYHTIGQRQG LGIGGLKDAS DEPWYVLHKD LARNVLVVGQ GNEHPWLFSR ALLASEIFWV NPVDLGSPRQ LTAKVRYRQS DQRCTLERTA SGYRAVFDEP QRAVTPGQSV VFYDGEVCLG GGVIEAAEPW SPRA
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