Gene PP_3953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3953 
Symbol 
ID1046611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4458975 
End bp4460429 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content59% 
IMG OID637147363 
ProductTrkH family potassium uptake protein 
Protein accessionNP_746083 
Protein GI26990658 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00933] potassium uptake protein, TrkH family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.433351 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCTTC CTGCATTGCG TTTCATCGCC TTCATTATTG GTGTATTCCT GATCACGTTG 
GCCGTCAGCA TGGTGATTCC AATGCTGACG CTGCTGGTGT ACGACCGCAG CGACGACCTC
GGTGCATTCG TCTGGTCGAG CCTGATCGTT CTGTGTGTCG GCCTGCTCAT GGTGGCCCGC
GGCGTACCCG ACACACCGCA ACTGCGGACC AGGGACATGT ATCTGCTCAC GACGGCAAGC
TGGGTCATCG TGTGCGCATT CGCGGCGCTG CCAATGGTGT TCATTCGACA CATCAGTTAC
ACGGACGCGT TCTTCGAAAC CATGTCGGGA ATCACCACCA CCGGCTCGAC CGTGCTGACC
GGCCTGGACA GTGCATCGCC GGGGCTGCTG ATATGGCGTT CGCTGCTGCA CTGGCTGGGA
GGCATTGGTT TTATCGGCAT GGCCGTGGCG ATCCTGCCAC TGCTGCGCGT GGGCGGCATG
CGCCTGTTCC AGACCGAGTC TTCGGATTGG TCTGACAAAG TGACGCCGCG TTCGCATGTG
GCAGCCAAGA TAATCCTGCT GGTCTATCTG GGCCTGACTG CATTGGGGAC GGGGGCATTG
TGGGCTGCCG GCATGACCCC GTTCGAAGCC ATCAATCATT CGATGTCGCT GGTTTCAACC
GGTGGTTTCT CTACCTCGGA TGCCTCGCTG GGCCATTGGG AGCAGCCAGC GGTGCACTGG
GTGGCTGTGG TCATCATGAT ACTCGGCAGC CTGCCCTTCA CATTGTATGT CGCCACGCTG
CGTGGCCATC GAGGCATCCT GCTCAAGGAC CATCAAGTTC GCGGTTTCAT TGGTTTTCTC
GTCTTCGTCT GGCTCACCGT CGGAACCTGG CTCTGCCTGC ACAGCAATCT GGCCTGGTGG
GATGCGTTTC GTATCGTTGC GGTGAATGTG ACCTCGGTAG TAACCACAAC AGGCATTGCC
GTGGGTGATT ACACACTCTG GGGCAGCTTC GCCATCATGC TGTTCTTTTA CCTGACGTTC
GTCGGCGGGT GCTCGGGCTC CACCGCCGGC GGTTTGAAAA TATTCCGTTT CCAGGTGGCC
GCGGCCTTGC TTGTCAGCAG CCTGAAGCAG TTGATCCATC CACGGGCAAC GATCTCGAAG
AAATACAATG GGCACCCCAT CGATGAAGAG ATCGTACGGT CACTGCTGAC GTTCTCGTTC
TTCTTCACCG TCACCATTGC GGTCATCGCC CTGGGCCTGT CTTTGATAGG ACTCGACTGG
ATGACGGCGT TGAGCGGGGC GGCCACCGCC GTGTGCAACG TCGGTCCAGG CCTGGGGACG
CTTATCGGTC CAGCAGGTAA TTTCGCCTCC TTGCCGGACG CAGCGAAATG GTTGCTGACG
GTTGGCATGC TGCTTGGACG GCTCGAGATC CTCACCGTAC TGGTACTGGT CTCGCCAGTC
TTCTGGCGAT TCTAG
 
Protein sequence
MPLPALRFIA FIIGVFLITL AVSMVIPMLT LLVYDRSDDL GAFVWSSLIV LCVGLLMVAR 
GVPDTPQLRT RDMYLLTTAS WVIVCAFAAL PMVFIRHISY TDAFFETMSG ITTTGSTVLT
GLDSASPGLL IWRSLLHWLG GIGFIGMAVA ILPLLRVGGM RLFQTESSDW SDKVTPRSHV
AAKIILLVYL GLTALGTGAL WAAGMTPFEA INHSMSLVST GGFSTSDASL GHWEQPAVHW
VAVVIMILGS LPFTLYVATL RGHRGILLKD HQVRGFIGFL VFVWLTVGTW LCLHSNLAWW
DAFRIVAVNV TSVVTTTGIA VGDYTLWGSF AIMLFFYLTF VGGCSGSTAG GLKIFRFQVA
AALLVSSLKQ LIHPRATISK KYNGHPIDEE IVRSLLTFSF FFTVTIAVIA LGLSLIGLDW
MTALSGAATA VCNVGPGLGT LIGPAGNFAS LPDAAKWLLT VGMLLGRLEI LTVLVLVSPV
FWRF