Gene PP_3950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3950 
Symbol 
ID1046614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4454806 
End bp4456983 
Gene Length2178 bp 
Protein Length725 aa 
Translation table11 
GC content63% 
IMG OID637147360 
Productmethyl-accepting chemotaxis transducer 
Protein accessionNP_746080 
Protein GI26990655 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.691578 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGAAGA TAATGTCGCT TTCCAGTGGT TCGATGCAGT TATCGTCGAG TGAAAAGGGC 
TGGCTGCCGT GGTTCGGCAA AACCGGCAAA TTCAGCATGG GCTGGGCGTG CCGCCTTAAC
CGGGCCAGTT ACCCGCAGGT CGAGCAAACC TTCGAAGCCA TCGCCCAGAC CCGAGTGCAG
TTGCTGCATG AGTGGGTGCG CGAACAGTGG GAGCACCTGG CCGACCTGGC CGAGCAGGTG
GCGCCCGGGC TCGCTCAAGT CGATAGCGCG ATGTTGCGCA ACACGCTGGC CCAGGCGGAG
GACTTTTCCG AACTGTTTGT CGTCGATGTG CACGGCAGCG TCACCGCTTC GACCTGGCCC
CAGCGTGGCA CGCCACGTAT CGAGTATTTG GCAGCTCTGG CGCAGGGGCT GAAAGCACCG
TTTCTGCACG GGCCCTACAG CGACTCGCTG ACCTTGCAGA TCGGCCCGTC TTCCTCGCGC
TTCCACGATG AAGTCACGTT GATGTTCTAC CAGCCCCTCA TGCACGAGGG CAAAGTGCTG
GGTTGTCTGT GTGGGCGGGT GCCCAACGAT GTGCTGGGTG ACCTGATCCA GCGCGAGGCA
GGGCACATTT ACCCCGAGTC GGGCGACAAC TACCTGTTCA TGGCGCAATC GCGCTTCGAC
CCTGGCATAC AGCCCGGTAC CGCGTTGTCC CGCTCGCGTT TCGAGGACGC CACTTTCACC
CATGGCGAAA ACCTCAAGAA CGGTATGCAC ACGCCCTGGG CCACTGTACA GGTCCAGCGC
CATACCGAGC TGGAGCTTCG TTTCACCGAC CCTTCCACGC GGGAACTGCA CCCTGGCGTG
AGGGAGACGA TCAGGCGGGG TGCCAACCTG TTCGTGACCT ACCCCGGCTA TTCGGACTAC
CGTCATGTGC CAGTGGTGGG CAAGGGCGTT ACCTTCCAGT TGCCGGGCTC GCCCGACCGC
TGGGGCATGA TGTGCGAGGC GGACCTGGAG GAGGTCTACC GCCGGCGTTC GCTGAGCTAC
GGGTTGATGA AACCCTATGT GGCGATCATG GCGGGGCTGT TCGGCTGCAA TTACCTGGTG
CAGCACTATG CAGGCCTGCC GCAAGGACTG ACTGACGTGA TCGAGGCCTT GAGCATGCTG
GGCGCCACCT TGTTGTTTGG CGTGCTCGGG CCCAAGCGCC TGGCCGCGAG GTTGAATGGT
ATGAGCAGTG TGCTATGCAC CATCGCCGAG GGTGAAGGCA ACCTGCGCCA GCGCCTGGAT
ACCAGCACCT TGGCCAATGA TGAGAGCGGC GACATGGCAC GCTGGATCAA CAGCTTCATC
GACCGCCTGG ACGCGGTGGT CGGGCAGGTG GTCAAGGCCA GCCGCACGGT CGGCAGCACC
AACCAGATGA TGCTCGGGCG CAGCCAGGAG GCCAGCGTAA GCTCCGCCGA CGTGGCCGAC
GCCGTGCACC AGATGATGAT CATCATGGAA GAGCAACTCG GCGAACTGCA GCAGGCCTCG
GTCAGCGCCG AGCAGATGAA GCAGGCCATG GACGAAGTGG TCAGCCGCGC ACGCGCGCAG
TACCAGGCGG TGCAGGCGGG CACGCAGTCG ATCCGCGATG TGGTGGCGCG CTCATCATCC
AGCGTGCAGC GGCTCGACAG CCGCATGGTC GAGATCGACA ACATCACCGG GTTGATCAGC
GAAATCACCA ACCAGACCAA CCTGCTGGCG CTCAATGCCG CCATCGAGGC GGCGCGTGCC
GGGGAGCATG GCCGTGGCTT CGCGGTGGTG GCCGACGAGG TGCGCAGCCT GGCCGCACGC
ACCTCGCGTG CCGCCGACGA CATTCGCCAC ATGGTCGAGA GCCTGCAGGG CGAAACCCGG
CAGGCGGTAA GCTTCATGGA GCAGGGCGTG CAGGACGTCG ACAACAGCCT GCGCCTGGCG
GAGGACGCTT CTTCCGAAAA TGTACAGCTG CACCAGGCGG TGGAGAGCAT GTTCGCCATT
ATCCAGCAGC TCAACCGTCG CAGCGTGGAA TACGGCAAGA CGATCGAGCA GGTCAACCAG
TCCTCCAGCG AGATGCGCCA GACCGCCCTG GTGCTGCAAA GCAGTGCGCA GAAGGTGAAG
GTGGATGCTG GCAAGTTGCA GAAGCTGGTG GGGCAGTTCG AAGTCAGTGA TGATGGCGAA
CGAGGCGTCG CTGCTTGA
 
Protein sequence
MVKIMSLSSG SMQLSSSEKG WLPWFGKTGK FSMGWACRLN RASYPQVEQT FEAIAQTRVQ 
LLHEWVREQW EHLADLAEQV APGLAQVDSA MLRNTLAQAE DFSELFVVDV HGSVTASTWP
QRGTPRIEYL AALAQGLKAP FLHGPYSDSL TLQIGPSSSR FHDEVTLMFY QPLMHEGKVL
GCLCGRVPND VLGDLIQREA GHIYPESGDN YLFMAQSRFD PGIQPGTALS RSRFEDATFT
HGENLKNGMH TPWATVQVQR HTELELRFTD PSTRELHPGV RETIRRGANL FVTYPGYSDY
RHVPVVGKGV TFQLPGSPDR WGMMCEADLE EVYRRRSLSY GLMKPYVAIM AGLFGCNYLV
QHYAGLPQGL TDVIEALSML GATLLFGVLG PKRLAARLNG MSSVLCTIAE GEGNLRQRLD
TSTLANDESG DMARWINSFI DRLDAVVGQV VKASRTVGST NQMMLGRSQE ASVSSADVAD
AVHQMMIIME EQLGELQQAS VSAEQMKQAM DEVVSRARAQ YQAVQAGTQS IRDVVARSSS
SVQRLDSRMV EIDNITGLIS EITNQTNLLA LNAAIEAARA GEHGRGFAVV ADEVRSLAAR
TSRAADDIRH MVESLQGETR QAVSFMEQGV QDVDNSLRLA EDASSENVQL HQAVESMFAI
IQQLNRRSVE YGKTIEQVNQ SSSEMRQTAL VLQSSAQKVK VDAGKLQKLV GQFEVSDDGE
RGVAA