| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3549 |
|---|
| Symbol | emrA |
|---|
| ID | 1046243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4024502 |
|---|
| End bp | 4025695 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637146964 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | NP_745686 |
|---|
| Protein GI | 26990261 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACTC CCACAGACAC CCCGACTCCC TCCGTCGCGC CTGAGCCGTC GCGCAAGCGC
AAGGCTTGGC TGCTTGGCCT GCTGTTGCTG CTGATCCTTG CCGGGGTCGG CACCTGGGCC
TGGTACAGCA TTGTCGGGCG TTGGCACGAA AGCACCGACG ATGCCTACGT CAACGGCAAC
GTGGTGGAAA TCACCCCGCT GGTCGCTGGC ACCGTTACCA GCATCGGGGC CGATGACGGC
GACCTGGTCC ATGCCGGCCA GGTATTGCTG CAATTCGACC CGGCCGACAG CGAAGTGGCC
TTGCAGTCCG CCGAAGCCAA GCTGGCACGC AGCGTGCGGC AGGTGCGCGG GCTTTACAGC
AACGTCGACT CGCTGAAGGC TCAACTGGAA ACGCGCCAAG CCGAACTGCG CAAGGCGCAA
CAGGACTTCA ACCGGCGCAA GGTGCTGGCT GACAGCGGTG CGATTGCCGC AGAAGAACTG
TCCCACGCCC GTGACGACCT GAGCGTTGCC CAGGCTGCCG TCAACAGCGC GCGGCAACAG
CTCAGCACCA GCAGCGCGCT GGTCGACGAC ACCGTGGTGT CCTCGCACCC CGATGTCATG
GCTGCAGCTG CCGACCTGCG CCAGGCCTAC CTCGACCACG CCCGCACCAC GTTGGTCGCG
CCGGTCACCG GCTACGTCGC CAAGCGTACC GTCCAGTTGG GCCAGCGCCT GCAGCCGGGC
ACCGCGACCA TGGCGGTCAT CCCGCTGGAT CAGGTGTGGA TCGATGCCAA CTTCAAGGAA
ACCCAGCTGC GAGAGATGCG CATCGGCCAG CCGGTGGAAA TCACCGCTGA TGTGTACGGC
AGTGAGGTCA AGTACAGCGG CACGGTCGAC AGCCTTGGTG CGGGCACCGG CAGCGCCTTT
GCCTTGCTGC CGGCGCAGAA CGCCACCGGC AACTGGATCA AGATTGTCCA GCGAGTACCC
GTGCGCATCC ACCTCAGCCC CGACCAGCTC AAGGACCACC CGCTACGTAT CGGCCTGTCC
ACCGTGGTTG AAGTCGACCT GCATGACCAG AGCGGCCCGA CCCTGGCCCA GCAGCCACCG
CAGAAGGCCA GCTACACCAC CCAGGTGTAT GACCACCAGC TGATGGAAGC CGACAACCTG
ATCGCCCGGC TGATTCACGA GAACAGCGCA ACCGGCAAGA CGGCGCAACG ATGA
|
|---|
| Protein sequence | MATPTDTPTP SVAPEPSRKR KAWLLGLLLL LILAGVGTWA WYSIVGRWHE STDDAYVNGN
VVEITPLVAG TVTSIGADDG DLVHAGQVLL QFDPADSEVA LQSAEAKLAR SVRQVRGLYS
NVDSLKAQLE TRQAELRKAQ QDFNRRKVLA DSGAIAAEEL SHARDDLSVA QAAVNSARQQ
LSTSSALVDD TVVSSHPDVM AAAADLRQAY LDHARTTLVA PVTGYVAKRT VQLGQRLQPG
TATMAVIPLD QVWIDANFKE TQLREMRIGQ PVEITADVYG SEVKYSGTVD SLGAGTGSAF
ALLPAQNATG NWIKIVQRVP VRIHLSPDQL KDHPLRIGLS TVVEVDLHDQ SGPTLAQQPP
QKASYTTQVY DHQLMEADNL IARLIHENSA TGKTAQR
|
|---|
| |