Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3487 |
Symbol | |
ID | 1046428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 3951228 |
End bp | 3951893 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637146902 |
Product | electron transport protein SCO1/SenC |
Protein accession | NP_745624 |
Protein GI | 26990199 |
COG category | [R] General function prediction only |
COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.108073 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACTG CAACCTCCCA CCGCGCTGGC ATGCGGGCAT TCGACTGGCT GGTACTGGGT GGCTGCCTGT GGATCCTCAC GTCGGTGGCG TTCGCCCACG AAGGCCATGC GCCGCAAGCC CCCGAGCCGC AGCCAGCACC GCAGGCGATG GCCAGTGGTG GCGGTACCCG CGACGCCAAG ACCTGGTTCA CCGACACCGT GCTGAAGGAC CAGAATGGCC GCGAGCTGCG CTTTTACAGT GACGTGCTCA AGGACAAGGT GGTGATGCTC AACGTGATCT TCACCCATTG CACCGATGCC TGCCCGTTGA TCACCCGCAA GCTGCGCGAG GTGCGCGAGG CCATGGGGCC AGCGCTGGCC GCCCAGGTGA CCTTCGTGTC GATCAGCAGT GACCCGCTGA ACGACACCCC CGAGGCGCTG AAGGCGTTCG CCGCCAAGCA GGGGGTGGAT GGGCCGAACT GGCTGTTCCT GACCGGCGAC AAGGCCAATG TCGACCTGGT GCTTGGCCGT ATAGGGCAGT TCCTGCCGAG TCCCGAGCAG CATTCGACGC AGCTGATTGC CGGTGATGTT GCAGGTAAAC GCTGGAGCAA GATTCGCCCG GATGCACCGC CAGCGGCGAT TGCCCAGCGC ATGCAGCTGT TGACCCAGCC GCTGGCCGGT CGGTGA
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Protein sequence | MSTATSHRAG MRAFDWLVLG GCLWILTSVA FAHEGHAPQA PEPQPAPQAM ASGGGTRDAK TWFTDTVLKD QNGRELRFYS DVLKDKVVML NVIFTHCTDA CPLITRKLRE VREAMGPALA AQVTFVSISS DPLNDTPEAL KAFAAKQGVD GPNWLFLTGD KANVDLVLGR IGQFLPSPEQ HSTQLIAGDV AGKRWSKIRP DAPPAAIAQR MQLLTQPLAG R
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