Gene PP_3368 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3368 
Symbol 
ID1046546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp3811674 
End bp3812858 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content65% 
IMG OID637146786 
Productmajor facilitator family transporter 
Protein accessionNP_745508 
Protein GI26990083 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00535921 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0620649 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGTCC AGGAACACCC CCCGCTCCCC AGTAAAAACA CCGTCGCCAA GATGGAAGCC 
GCCATGGCAC TGGGCAGCTT TGCCATCGGC ACCGGCGAAT TCGCCATCAT GGGCCTGATG
CCCGACATTG CCAGCAATTT GCAGTTGAGC GAACCGCAGG TGGGCCATGC CATCAGCGCG
TATGCGCTGG GGGTAATGGT TGGCGCCCCG ACACTGGCCA TTCTCGGTGC CAAACTGCTG
CGCAAGCACA TGCTGCTGCT GTTGATGCTG CTGTATGCCG TGGGCAACCT GGCCACTGCC
TTTGCCCCCT CGTTCGGTGG CCTGGTCGCA TTTCGTTTCA TCAGCGGCCT GCCCCACGGC
GCCTACTTCG GCATTGCCGC AGTGGTGGCC TCGAGCATGG TCGCCAAGGA TCAGCGCGCG
GGGGCCGTTG CCCGGGTGAT GATGGGCCTG ACCTTGGCCA TGTTGCTCGG CAACCCGGTT
GCCACCTTCC TGGGCCAGTA CTTCGGCTGG CGTTCGGCAT TCGTGCTGGT CGGCGCGATC
GCCCTGTGCA CCATCGCCCT GGTCTGGCGT TTCGTGCCCC AGCGCCACGA CGAAACACGC
AGCGACCCGC GCAAGGAGCT CCAGGCCTTT GCCCTACCAC AGGTATGGAT GGCGCTGGCC
ATCGCTTCGA TCGGTTTTGC CGGCATGTTC TGCGTGTTCA GCTACCTGGC ACCGACCATG
CTGCAAGTGA CCCAGGTGTC GCCACAGTGG ATTCCGTTCG GTCTGGCGGC GTTCGGCGTG
GGCGGTATCG TCGGCAACAT CGCTGGCGGC AAGCTGTTCG ACCGCCTGCA GTTCCGCGCC
GTGGGCTTGG TACTGATGTG GTCGGTCGCC GTGCTGCTGT TCTTTACCTT CGCCGCCCAG
GCGCTGTGGA GCCTGCTGCT GGGCATCGGC CTGGTGGGCA CCATGATCGC CTTGGCGGCA
CCGCTACAGA TCCGCCTCAT GGACATTGCC CATGAGGCGC CTAGCCTGGC AGCGGCGTCC
AACCATGCGG CGTTCAACCT GGCCAATGCC CTGGGGCCGT GGCTGGGAGG CATGGCGATC
ACTGCCGGCA TGGGCTGGAC CAGCACCGGA TACATCGGCG CCGCGACTGC GCTGGTTGGC
CTGGGCATTT ACCTGGTGGC GCGGCGGATG AAAGGCGGGC ATTGA
 
Protein sequence
MSVQEHPPLP SKNTVAKMEA AMALGSFAIG TGEFAIMGLM PDIASNLQLS EPQVGHAISA 
YALGVMVGAP TLAILGAKLL RKHMLLLLML LYAVGNLATA FAPSFGGLVA FRFISGLPHG
AYFGIAAVVA SSMVAKDQRA GAVARVMMGL TLAMLLGNPV ATFLGQYFGW RSAFVLVGAI
ALCTIALVWR FVPQRHDETR SDPRKELQAF ALPQVWMALA IASIGFAGMF CVFSYLAPTM
LQVTQVSPQW IPFGLAAFGV GGIVGNIAGG KLFDRLQFRA VGLVLMWSVA VLLFFTFAAQ
ALWSLLLGIG LVGTMIALAA PLQIRLMDIA HEAPSLAAAS NHAAFNLANA LGPWLGGMAI
TAGMGWTSTG YIGAATALVG LGIYLVARRM KGGH