| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3342 |
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| Symbol | nikA |
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| ID | 1046986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3779547 |
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| End bp | 3781121 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637146760 |
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| Product | nickel ABC transporter, periplasmic nickel-binding protein |
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| Protein accession | NP_745482 |
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| Protein GI | 26990057 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02294] nickel ABC transporter, periplasmic nickel-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCAGC AGCCTGGTAA ACGAAAGCCC GCCCTGTGGG GCCTCCTTCT TCTTGCTGCG
TGCGCTGCTG CGCCGGCCAG CCGCGCCGCC GAGCAAGGGC CGCAGCTGGT GTACTCCTGG
CCTGTGAATG CCGGGCCGCT CGACCCGCGT GGCTATTCCC CCAACCAGAT GTACGCCCAG
GCCATGGTCT ATGAACCCCT GGTGCGCTAT ACCGCCGCGG GTACGCTGGA GCCATGGCTG
GCTGAGGCCT GGCAGGTTTC GGACGACGGC AAGACCTACA CGTTCACCCT TCGCGACGGC
GTGCGCTTCA GCGATGGCAC ACCCTTCGAT GCGCCTGCGG CCAAAGCCAA CCTCGATGCC
GTCCTGGCCA ACACTCAGCG TCACCGCTGG ATGGAACTGG TGACCACACT GGACCACGTT
GAAGCGCCTG AGCGCCTGAC CCTGCGCCTG GTCCTCAAGC ACCCTTACTA CCCGACGCTG
ATGGAGCTGG CCCAGGTTCG CCCATTGCGC TTTGCCTCGC CTCAGGCCAA ACCCGGCCAA
CCGGCCGGTA CCGGCCCCTG GATGCGCGCC GAATCACGCC TGGGCGAATA CGACCGCTTC
GTGCGCAACC CCCAGTACTG GGGGCCCAAG CCGGCCTACG GCGAGGTCAT GGTCAAGGTC
ATTCCAGACC CCAACAGCCG CGCGCTGGCC CTGCAGGCCG GCGAGGTCGA ACTGATCCAG
GGCGCCGCCG GCGAGATCAC GGCCGGCACG TTCGTGCGCC TGCGTGACCA GGGCTATGCC
ACCGCACTGT CGGCACCGCT GGCCACCCGC ACCCTGGCGA TGAACACCGG CCGTGGTGCT
ACCCGTGATC TGGCGGTACG CCAGGCGATC AACGAGGCGG TGGACAAGCA AGCCATCATC
GACAAGATTC TCTACGGCCT TGAACCCCGG GCAGATACCC TGTTCGCCAG CAACATGCCC
TACGCCGATA TCGGCCTCAA GCCCTACCCT TACGACCCGG CGCGCGCCGC CCATGCCCTT
GATGCTGCCG GGTGGACGCT GGCCCCAGGC GCGTCTGTGC GCAGTAAAGG CGGCGAACCC
TTGGCCATCG AGCTGGTATT CCTCGGCACA AGTGCCTTGC AGAAGAGCCT GGCCGAAGTG
CTGCAGGGCG AGCTGGCGAA AATCGGCATC CACATCGACC TGCGTGCGGT TGAAGAAGGG
GCTTTGGTGC GGCGCCAACG CGACGGCGAC TTCGGCATGA TCTTCGCCGA CACCTGGGGC
GCGCCCTACG ACCCGCATTC GTTCGTCAGC TCCATGCGCT ACGCCGGCCA TGCCGACTAC
ATGGCCCAAC GTGGGCTGGC AATCAAGGAC GAACTGGACA AGCGCATTGG CCAAGTGCTG
GCCAGCACCG ACGAACAGCA GCGTGCCGAA CAGTACCGCT TCATCCTCAC CACCTTGCAC
GAACAAGCCG TCTACCTGCC CATCTCGCAT CTCACGGCCA TCAGCGTGCG CCGAGACTCG
GTGGCCAAGG TCCAGTTCGG CAGCACCTTG TTCGATGTGC CGTTCGAAAC CATGACGCCA
AAACAGGGAG ACTGA
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| Protein sequence | MKQQPGKRKP ALWGLLLLAA CAAAPASRAA EQGPQLVYSW PVNAGPLDPR GYSPNQMYAQ
AMVYEPLVRY TAAGTLEPWL AEAWQVSDDG KTYTFTLRDG VRFSDGTPFD APAAKANLDA
VLANTQRHRW MELVTTLDHV EAPERLTLRL VLKHPYYPTL MELAQVRPLR FASPQAKPGQ
PAGTGPWMRA ESRLGEYDRF VRNPQYWGPK PAYGEVMVKV IPDPNSRALA LQAGEVELIQ
GAAGEITAGT FVRLRDQGYA TALSAPLATR TLAMNTGRGA TRDLAVRQAI NEAVDKQAII
DKILYGLEPR ADTLFASNMP YADIGLKPYP YDPARAAHAL DAAGWTLAPG ASVRSKGGEP
LAIELVFLGT SALQKSLAEV LQGELAKIGI HIDLRAVEEG ALVRRQRDGD FGMIFADTWG
APYDPHSFVS SMRYAGHADY MAQRGLAIKD ELDKRIGQVL ASTDEQQRAE QYRFILTTLH
EQAVYLPISH LTAISVRRDS VAKVQFGSTL FDVPFETMTP KQGD
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