| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3280 |
|---|
| Symbol | phaD |
|---|
| ID | 1046928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3714632 |
|---|
| End bp | 3715852 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637146701 |
|---|
| Product | beta-ketoadipyl CoA thiolase |
|---|
| Protein accession | NP_745423 |
|---|
| Protein GI | 26989998 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02430] beta-ketoadipyl CoA thiolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.939828 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAC CGACCCACGC CGATGCCTTG ATCATCGACG CCGTGCGCAC GCCCATTGGC
CGCTATGCCG GGGCCCTGAG CAGCGTGCGC GCCGACGACC TGGCGGCCAT CCCGCTCAAA
GCCTTGATCC AGCGTCACCC CGAACTGGAC TGGAAAGCCA TTGATGACGT TATCTTCGGC
TGTGCCAACC AGGCTGGCGA AGACAACCGC AACGTGGCCC ACATGGCGAG CCTGCTGGCC
GGGCTGCCAC TCGAAGTACC AGGGACCACG ATCAACCGCC TGTGCGGTTC CGGTCTGGAT
GCCATCGGTA ATGCGGCACG TGCCCTGCGC TGCGGTGAAG CGGGGCTCAT GCTGGCCGGT
GGTGTGGAGT CCATGTCGCG TGCACCGTTT GTGATGGGTA AGTCGGAGCA GGCATTCGGG
CGTGCGGCCG AGCTGTTCGA CACCACCATC GGCTGGCGTT TCGTCAACCC GCTGATGAAG
GCCGCCTACG GCATCGATTC GATGCCGGAA ACGGCTGAAA ACGTGGCCGA ACAGTTCGGC
ATCTCGCGCG CCGACCAGGA TGCCTTTGCC CTGCGCAGCC AGCACAAAGC CGCAGCAGCT
CAGGCCCGCG GCCGCCTGGC GCGGGAAATC GTGCCGGTCG AAATCCCGCA ACGCAAAGGC
CCAGCCAAAG TGGTCGAGCA TGACGAGCAC CCGCGCGGCG ACACGACCCT GGAGCAGCTG
GCTCGGCTCG GGACGCCGTT TCGTGAAGGC GGCAGCGTAA CGGCGGGTAA TGCCTCCGGC
GTGAATGACG GCGCTTGCGC CCTGCTGCTG GCCAGCAGCG CCGCGGCCCG CCGCCATGGG
TTGAAGGCCC GCGGCCGCAT CGTCGGCATG GCGGTGGCCG GGGTTGAGCC CAGGCTGATG
GGCATTGGTC CGGTGCCTGC GACCCGCAAG GTGCTGGCGC TCACCGGCCT GGCACTGGCT
GACCTGGATG TCATCGAACT CAATGAGGCC TTTGCCGCCC AAGGGCTGGC CGTGTTGCGC
GAGCTGGGCC TGGCCGACGA CGACCCGCGA GTCAACCGCA ACGGCGGCGC CATCGCCCTG
GGCCATCCCC TGGGCATGAG CGGTGCCCGG TTGGTGACCA CTGCCTTGCA CGAGCTTGAA
GAAACGGCCG GCCGCTACGC CCTGTGCACC ATGTGCATCG GCGTAGGCCA AGGCATTGCC
ATGATCATCG AGCGCCTCTG A
|
|---|
| Protein sequence | MNEPTHADAL IIDAVRTPIG RYAGALSSVR ADDLAAIPLK ALIQRHPELD WKAIDDVIFG
CANQAGEDNR NVAHMASLLA GLPLEVPGTT INRLCGSGLD AIGNAARALR CGEAGLMLAG
GVESMSRAPF VMGKSEQAFG RAAELFDTTI GWRFVNPLMK AAYGIDSMPE TAENVAEQFG
ISRADQDAFA LRSQHKAAAA QARGRLAREI VPVEIPQRKG PAKVVEHDEH PRGDTTLEQL
ARLGTPFREG GSVTAGNASG VNDGACALLL ASSAAARRHG LKARGRIVGM AVAGVEPRLM
GIGPVPATRK VLALTGLALA DLDVIELNEA FAAQGLAVLR ELGLADDDPR VNRNGGAIAL
GHPLGMSGAR LVTTALHELE ETAGRYALCT MCIGVGQGIA MIIERL
|
|---|
| |