Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3271 |
Symbol | phaK |
ID | 1046920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 3706036 |
End bp | 3707289 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637146692 |
Product | outer membrane porin |
Protein accession | NP_745414 |
Protein GI | 26989989 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGGGTA AAACAACAAC AATGAACCGC ACACACTTCC TGTCAGCCGC CTGGCTGGCC ACCGTTGCCC TGCCGATGCC CGCGCTGGCC GACTTCATCG GCGACAGCCA TGCACGCCTG GAGCTGCGCA ACCACTACAT CAACCGTGAT TTCCGCCAGA GCAACGCCCC GCAGGCCAAG GCCGAGGAAT GGGGCCAAGG CTTTACCGCC AAGCTCGAAT CGGGCTTTAC CGAGGGCCCG GTCGGCTTTG GCGTGGATGC CCTGGGCCAG TTGGGCATCA AGCTCGACTC CAGCCGCGAC CGTCGCAACA CCGGCCTGCT GCCTTTTGGC CCGAACAGTC ACGAACCGGT CGACGACTAC AGCGAGCTGG GCCTGACCGG CAAGGTACGT GTGTCCAAGA GCACCTTGCG GCTGGGCACC TTGCAGCCGA TCCTGCCGGT GGTGGTGTAC AACGACACCC GCCTGCTGGC GTCCAGCTTC CAGGGTGGCC TGCTCACCAG TCAGGACCTC GATGGCCTCA CCTTCAATGC CGGACGCCTG ACCAAGGCCA ACCTGCGTGA CTCCTCTGGC CGCGACGACA TCGGCTATGG CGCTGCCAGC AGTGACCACC TGGACTTTGG TGGTGGCAGC TACGCCATCA CCCCGCAAAC CACGGTCAGC TATTACTACG CCAAGCTCCA GGACATCTAC CGTCAGCAGT TCGTCGGTCT GATCGACACC CGCCCGCTGG CAGAAGGTGT GAGCCTGCGC AGTGACCTGC GCTACTTCGA CAGCCGCAAC GACGGTGCCG AGCGTGCCGG CAACATCGAC AACCGTAACT TCAACGCCAT GTTCACCCTG GGCGTGCGGG CGCACAAGTT CACCGCCACC TGGCAGCAGA TGTCCGGTGA CAGCGCCTTC CCGTTCGTCA ACGGCGGCGA CCCGTTCACC GTCAACCTGG TCACCTACAA CACCTTCACC CGCGCCGGGC TGGACTCTTG GCAAGTGCGC TACGACTACG ACTTCGTTGC CATGGGCATC CCCGGCCTGA GTTTCATGAC CCGCTATACC GACGGTCGCC ACGCGGAAAC TGCCACCGTG ACCAATGGCC GTGAGCGCGA GCGCGACACC GACATCACGT ATGTCATCCA GAGTGGCCCG TTCAAGGACG TCAGCCTGCG CTGGCGCAAT GTCACCTTCC GCTCCGGCAA CGGCCTGACC AACGCCGTGG ACGAAAACCG CCTGATCATC GGCTACACCC TGGCGCTGTG GTAA
|
Protein sequence | MSGKTTTMNR THFLSAAWLA TVALPMPALA DFIGDSHARL ELRNHYINRD FRQSNAPQAK AEEWGQGFTA KLESGFTEGP VGFGVDALGQ LGIKLDSSRD RRNTGLLPFG PNSHEPVDDY SELGLTGKVR VSKSTLRLGT LQPILPVVVY NDTRLLASSF QGGLLTSQDL DGLTFNAGRL TKANLRDSSG RDDIGYGAAS SDHLDFGGGS YAITPQTTVS YYYAKLQDIY RQQFVGLIDT RPLAEGVSLR SDLRYFDSRN DGAERAGNID NRNFNAMFTL GVRAHKFTAT WQQMSGDSAF PFVNGGDPFT VNLVTYNTFT RAGLDSWQVR YDYDFVAMGI PGLSFMTRYT DGRHAETATV TNGRERERDT DITYVIQSGP FKDVSLRWRN VTFRSGNGLT NAVDENRLII GYTLALW
|
| |