Gene PP_2890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_2890 
SymbolxthA 
ID1042796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp3287297 
End bp3288109 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content63% 
IMG OID637146312 
Productexonuclease III 
Protein accessionNP_745034 
Protein GI26989609 
COG category[L] Replication, recombination and repair 
COG ID[COG0708] Exonuclease III 
TIGRFAM ID[TIGR00633] exodeoxyribonuclease III (xth)
[TIGR00195] exodeoxyribonuclease III 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00987023 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.852311 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCG TCTGTTTCAA CATCAACGGC CTGCGGGCCC GCCCGCATCA GCTGGCGGCG 
CTGATCGAAA AGCACCAGCC GGACGTGATC GGCCTGCAGG AAACCAAGGT CAGCGACGAT
CAGTTCCCGC TGGCCGACGT GCAGGCACTG GGTTACCACG TGCACTACCA TGGCCAGAAA
GGCCACTACG GCGTGGCCCT GCTGTCGCGC CAACCGCCGC TGAGCCTGCA CAAGGGCTTT
GCCACCGACG AAGAGGATGC CCAGCGCCGC TTCATCTGGG GTACCTTTGC CGATGCCAAC
GGCAGCCCGA TCACCATCAT GAACGGCTAT TTCCCCCAAG GCGAAAGCCG CGACCACCCC
ACCAAGTTCC CGGCCAAGCA GCGCTTCTAC AGCGACCTGC AGGCACTGCT GGAAAGCCAG
TTCCGCAACG ACCAGCCAGT GCTGGTGATG GGCGACATGA ACATCTCGCC GCAAGACTGT
GATATCGGCA TTGGCCCGGA CAACGCCAAA CGCTGGCTGA AGACCGGCAA GTGCAGCTTC
CTGCCGGAGG AGCGTGAGTG GATGGAACGT TTGAAAGGCT GGGGGTTGGT AGACAGCTTC
CGCCACCTGT ACCCGGACGT GACCGACCGT TTCAGCTGGT TCGACTACCG AAGCCGCGGC
TTCGAGGACG AGCCCAAGCG CGGCCTGCGC ATCGACCTGA TCATGGCCTC ACAGCAGCTG
GTGCCGCGCA TCAAGGCAGC GGGCGTGGAC TATGAGCTGC GCGGGATGGA AAAGCCGTCG
GACCATGCGC CGATCTGGCT GGAGTTGAGC TGA
 
Protein sequence
MKIVCFNING LRARPHQLAA LIEKHQPDVI GLQETKVSDD QFPLADVQAL GYHVHYHGQK 
GHYGVALLSR QPPLSLHKGF ATDEEDAQRR FIWGTFADAN GSPITIMNGY FPQGESRDHP
TKFPAKQRFY SDLQALLESQ FRNDQPVLVM GDMNISPQDC DIGIGPDNAK RWLKTGKCSF
LPEEREWMER LKGWGLVDSF RHLYPDVTDR FSWFDYRSRG FEDEPKRGLR IDLIMASQQL
VPRIKAAGVD YELRGMEKPS DHAPIWLELS