Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2665 |
Symbol | agmR |
ID | 1046089 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 3053242 |
End bp | 3053907 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637146087 |
Product | LuxR family two component transcriptional regulator |
Protein accession | NP_744809 |
Protein GI | 26989384 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.107491 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACAAAA TTCTGATTGC CGACGATCAC CCCCTGTTTC GCGAAGCCAT CCACAATGTC ATCAGCGATG GTTTCCAGGG CAGCGAGGTC ATGGAGACCG CCGACCTTGA AAGCGCCCTG GCCCTGACCC AGACCCATGA CGACCTCGAC CTGATCCTGC TCGACCTGAA CATGCCCGGC ATGCACGGCC TCAATGGCCT GATCACCCTG CGCAACGAGG CGCCAACCAC GCCGGTGGTC ATCGTTTCGG CCGAGCAGGA AAAGCAGATC GTGCTGCAGG CCATTACCTA CGGTGCCGTG GGCTTCATCA CCAAGTCGTC GCCACGCTCA CAGATGATCG AAGCGATCGA GCAGATCCTC AATGGCAATG TCTACCTGCC GCCAGACATC ATCCGCGCGC AAAAAAGCAG TACCAGCCGG CGCCATAACG ATGCCCCGAG CTTCCCTCCG GAAATGCTCC AGGCCCTGAC CCGCAAGCAA CTGCTGGTGC TCGAGCGCAT GACCAAAGGC GAATCGAACA AGCAGATCGC CTACACGCTG GACATCGCCG AAACCACCGT CAAGGCCCAC GTTTCGGCGA TTTTGCGCAA ACTCAATGTG CACAACCGGG TACAAGCCAT CCTCAGTGCT GGCGATATCG ATTTTGCTGA TTATCTGCGC CGTTGA
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Protein sequence | MYKILIADDH PLFREAIHNV ISDGFQGSEV METADLESAL ALTQTHDDLD LILLDLNMPG MHGLNGLITL RNEAPTTPVV IVSAEQEKQI VLQAITYGAV GFITKSSPRS QMIEAIEQIL NGNVYLPPDI IRAQKSSTSR RHNDAPSFPP EMLQALTRKQ LLVLERMTKG ESNKQIAYTL DIAETTVKAH VSAILRKLNV HNRVQAILSA GDIDFADYLR R
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