| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2627 |
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| Symbol | |
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| ID | 1046016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3003417 |
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| End bp | 3007037 |
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| Gene Length | 3621 bp |
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| Protein Length | 1206 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637146049 |
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| Product | hypothetical protein |
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| Protein accession | NP_744771 |
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| Protein GI | 26989346 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAAA TATGGACGCA ACTCAAACGT TGGGGCTGGC CGTGGGTAAC GCGCATTGGC
CTGGCGCTGC CGCTGCTGCT CGGGCTTGGC GCCTTGCTGA TGCTGGTCGC CATCTGGTGG
CTTGGCCCGC AATGGACGTG GCGTGAGCAG CAGCCGCTGG CAAGTGTGGC TCATCGCAGC
GTGGCAAGCC TGGTGCTGGT GCTGGTGCCG CTTCTGTGCT GGCTTGGGGT GCTGCGCACG
CGCTTTCGCC GCCTGCAAGC GGAGCGCCGC CAGGCACTGG CCGCCGAACA GGATGTCGCG
CTACCATTCG TGCAGGCGCA AGAGCGGGCC TTGAGCCAGG GGCTTGAGCG GTACCTCGAC
AATGCCGGTG GGCGACGCGC GTTGTACCGG CTGCCCTGGT ACCTGGTGTT GGGCGACGAA
CAGTCCGGTA AAAGCAGCTT CATCGACCGC ACCGATCAGC GCTTTACCCT GACGCGTATC
GACCAGGCCC AGGCACGGGG CCGACAGACT CAAGCAATGG CCTACCCGGT AGGCTGGTGG
GTCAGCGACG ATGCCGTGAT CATCGACCCG CCCGGTGTTT TCATCAGTCA AAAACCACCG
GTGGGCTCGG CGGCCAACGC CCCCTCCGAA GCCTCCGCGC CGCCCGGCAT CCAGGCCCGG
TTATGGGAGC ACCTGTTGGG CTGGCTGCAG CGTAAGCGAA GCCAGCGGGC GCTCAATGGA
GTGTTGCTGG TGGTCGACCT GCCGGCGTTG CTGCATGGCA GGCCCGAGCA GCGCGTCGCG
CTGGCCCATG GGTTGCGCAC ACGCCTGTAC GAAGTGAGCA GTCAGTTGGG GGCGCGCCTG
CCGCTGTACG TGGTACTGAC CAAATTCGAT CTGCTGGACG GCTTCGACCA GTTCTACAGC
CAGCTTCCGG CCGCCAAGCG TAAAAGCCTG TTGGGGTTCA CCTTCAAGCT GGATGCGGTT
GACGCGTTCG ACGCCTGGCT GGATGAGTAT GACGAGCACT ACGGGCGGCT TCTCACCCAA
TTGCAGGAGC AGGTCATCGA CCGGCTGGAT GTACTGGGCA AGACAGCGCC GTGCGGGCGC
CTGTTCTCAC TGCATGCACA GTTGATCGGG TTGCGCCCCA TACTGCAGGC ATTCCTGCGC
GAAACCTTGG CGAGTGACCG GTTCACCACG CCACCCTTGG TACGTGGTGT GTACTGGTCG
TCAGTGGTAC AGCAAGGCGA CATGCGCAAT GCCTTTGTCC GAGAAGCGGC TCAGCCCTAC
ACGACGAAGC TGCCCCTGCG TGAAGGTAAG GCACAGGGGA AGGCGTTGGT CTATTTCATC
CAGCAAGCAT TCAGGCGGGT TATCTATCAG GAAGCCGGGC TGGCGGGTGA CAATGTTCGG
GTTGCGCGCA GCAAGCGCCA CTTGCTGTGG GTGGGCTCTG GTGTAGGCAT CCTGGCGTTC
AGTATCGCCG TTGCCAGCTG GCAGCGTTAC GCCGACATCA ATGGCGCCAA GGCTGCCAGT
GTGCTCGCCA AAAGCCAGGA GTACAGCGGT CACGAAGTCG ATATGCGTCT TGATCCGACC
GGGCGCAACC TGCTGGCGCC ACTGGACCAG ATTCGCGATG CGGTCGCGGT GTTTGGCGAC
TATCGTGCGG CCTGGCCGGT GGTTGCCGAT TTTGGCTTGT ATCAAGGGCG CAACATTGGT
CCCTTGGTTG ATGAGGCGTA CCTCAGCTTG TTGTCTAAAC GTTTCTTGCC GGCCTTGGCC
AGTGGTGTGA TCGATGCCAT GAACGCAGCA CCACCTGGCA GCGAGCAACA AATGGCCGCG
CTCAGGGTTT ACCGGATGAT CGAGGACCGC AACAGCCGCC GGCCCGAATG GGTCGAGGAC
TGGATGGCCC GTCAGTGGCA ACGGGCCTTT CCTGGCCAGG GGCAGTTGCA GCGTGACCTC
ATGCAGCACC TGAAATACGC CTTGGCCTAT GCCGATACCG ATTTGCCGCA GTACCGCCAG
CGGGTCAGCG AAGTGCAGCA GGCGCTGCGC AAATTGCCGT TGCCACAGCG GGTCTATGCA
GGGCTGAAAC AACAATCGTA CCAGCAGTTG CACGCCGGGC TGGACCTGCG CCACCAGGTA
GGGCCTGCGT TCGATGTGGT GTACCAGCCG TCTTCCGGGG CCAGGCAAGG GGATGAGGAT
GTACGGCTGG CCGCCATGCT CACCGCCAAA GGCTTCAGGG AATACTTCGA GCCGCACAGC
CAACGCTTCG CTGAAATGGC GATGGTTGAT CAATGGGCAT TGGGGGAGCG CAGTCAACTC
GACTATTCGG ACGTCGACCG CGATGCGCTG ACCGAGCGGC TGTATAACCT CTACAGCGCC
GATTACATTG ACAGCTGGCG GCGCGCCCTG ACCGCTTTTA CGGTGGCTGA CTTCCGTGAT
CTGGACCATG GTGTCGCGAT CCTGGAGCAG TTGACCGGCC CCGCAGCACC ATTGCAACGG
CTGCTGGATA CGGTCAGGGA TAACACCTCG CTTGCGCCTC CAGCAGCTGT TGAAGCATCG
GGTGAGCTGA GTACGCTGCG CGTAGCAACC GGAAAACCCG AGCAACAGCA AGCGTTGGCC
ATCCAGCGGG CGTTTGCAGG CCTTGGCGCC ATGCTGCAGG CGACAGGAGA AAAGCCGAGC
TACTACGATG AAACCCTTGG CGCTGTTGCG GCCGTGCTGG ACTACGCCAA GGCCGTACAG
GACAGCCCGG ACCGCGGCAA GGCTGCTTTG CAGGCCGTGC ATCAGCGCTT TGCGATGACA
GGGCAGGACC CGATAGGCAC CCTCCAACGT ATTGCCACAG GTTTACCGGA GCCTATCAGC
CACCAGGTCA GAAAGCTCGC CGACCAGACT GCCCAGGTGC TGAACGTTGA AGCACTGCGC
GAACTGGAGC GACGTTGGGA TGCTGACGTG TACAGTTTTT TCCAGCAACG CCTGGCAGGC
CGCTACCCCT TTGTGGTGAA GGCACCCGAT GCTTCTTTGG ATGACTTCGA GGCGTTCTTC
GGGCCGAAAG GGCGCCTGCA GCAGTTTAAT GATCGGTATC TCAAGGTTTT CCTGAAGGAC
AACCTTGAGG CCTTGCAGTC CGCTCAGCAC GGGCAATCCC TGATTCGTGC CGACGTGATC
GAGCAGCTCG AGCTGGCGGA GCGCATCCGC GAAACCTTCT TCGATCAGCG TGGCAAGCTA
AGTGTGCAGT TCAGCATCGA GCCCTTGGGG CTCAGTGCAA ACCAGCGTAC CAGCCTGCTG
GACCTGGATG GCCAGTTGAT TGCCTACACC CATGGGCCAA GCCATATCAC GGGTATTGTC
TGGCCCAATA CCTTGGGGCA GCAGGTCCGC AGCAATCTCA CCTTGCTAAG GCAAAATGGC
AACAGCAGCA GCCTGGAGTA CCGTGGCCCG TGGTCGATGT TCCGCTTGCT CAGCCGCGGT
GCGCTCAATG GCCGGACGGC GACCAGCGTG GACCTGAGCT TCAGGACCGG AGATGGCGTG
ATGCGCTATC GGCTTAACGC TGAAAAAGCC TTCAATCCCA TTACCCAGCA ACCTTTCAAA
GGCTTCCGCT TGCCCCGAGG CTTGTTGCAA CAGCCAGCCA GTGTGGTGCA GGCGGTGCTA
CCGGATGGGC AGCGACTATG A
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| Protein sequence | MNQIWTQLKR WGWPWVTRIG LALPLLLGLG ALLMLVAIWW LGPQWTWREQ QPLASVAHRS
VASLVLVLVP LLCWLGVLRT RFRRLQAERR QALAAEQDVA LPFVQAQERA LSQGLERYLD
NAGGRRALYR LPWYLVLGDE QSGKSSFIDR TDQRFTLTRI DQAQARGRQT QAMAYPVGWW
VSDDAVIIDP PGVFISQKPP VGSAANAPSE ASAPPGIQAR LWEHLLGWLQ RKRSQRALNG
VLLVVDLPAL LHGRPEQRVA LAHGLRTRLY EVSSQLGARL PLYVVLTKFD LLDGFDQFYS
QLPAAKRKSL LGFTFKLDAV DAFDAWLDEY DEHYGRLLTQ LQEQVIDRLD VLGKTAPCGR
LFSLHAQLIG LRPILQAFLR ETLASDRFTT PPLVRGVYWS SVVQQGDMRN AFVREAAQPY
TTKLPLREGK AQGKALVYFI QQAFRRVIYQ EAGLAGDNVR VARSKRHLLW VGSGVGILAF
SIAVASWQRY ADINGAKAAS VLAKSQEYSG HEVDMRLDPT GRNLLAPLDQ IRDAVAVFGD
YRAAWPVVAD FGLYQGRNIG PLVDEAYLSL LSKRFLPALA SGVIDAMNAA PPGSEQQMAA
LRVYRMIEDR NSRRPEWVED WMARQWQRAF PGQGQLQRDL MQHLKYALAY ADTDLPQYRQ
RVSEVQQALR KLPLPQRVYA GLKQQSYQQL HAGLDLRHQV GPAFDVVYQP SSGARQGDED
VRLAAMLTAK GFREYFEPHS QRFAEMAMVD QWALGERSQL DYSDVDRDAL TERLYNLYSA
DYIDSWRRAL TAFTVADFRD LDHGVAILEQ LTGPAAPLQR LLDTVRDNTS LAPPAAVEAS
GELSTLRVAT GKPEQQQALA IQRAFAGLGA MLQATGEKPS YYDETLGAVA AVLDYAKAVQ
DSPDRGKAAL QAVHQRFAMT GQDPIGTLQR IATGLPEPIS HQVRKLADQT AQVLNVEALR
ELERRWDADV YSFFQQRLAG RYPFVVKAPD ASLDDFEAFF GPKGRLQQFN DRYLKVFLKD
NLEALQSAQH GQSLIRADVI EQLELAERIR ETFFDQRGKL SVQFSIEPLG LSANQRTSLL
DLDGQLIAYT HGPSHITGIV WPNTLGQQVR SNLTLLRQNG NSSSLEYRGP WSMFRLLSRG
ALNGRTATSV DLSFRTGDGV MRYRLNAEKA FNPITQQPFK GFRLPRGLLQ QPASVVQAVL
PDGQRL
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