| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2615 |
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| Symbol | hcp-1 |
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| ID | 1046004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 2991551 |
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| End bp | 2992066 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637146037 |
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| Product | hcp protein |
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| Protein accession | NP_744759 |
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| Protein GI | 26989334 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0191752 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACAC CCGCTTACAT CAAGATCGTA GGCCAGACCC AAGGCAACAT CACCGCTGGC
GCCTTCACCG CTGACTCCGT CGGCAACGTG TTCCAACAAG GCCATGAAGA TCAGATTCTG
GTTCAGGAAA TCAAGCATGA GGTGACTACG CCCACTGACC CCCAGAGCGG TCAACCGAGT
GGCCAGCGCG TGCATAAGCC TTTCATATTC ACCAGTTCAC TGAACAAAGC TACCCCCCTG
ATGTATCAGG CACTTGCCAA CGGCGAAATG CTGCCAACGG TCGAGGTCAG CTGGTATCGC
ACCTCGTCGG AAGGCAAACA AGAGCATTTT TTCACCACCA CGCTCGAAGA CGCCACCATC
GTCAGCATCA ATACCGTGCT TCCCCACGCA CTCGACAAAG ACAATGAAAA CTACACCCAA
CTGGTTGAAG TATCGCTGGC GTATCGAAAG ATCACGTGGG CTCACGATGT AGCCAACACC
GAAGGCTCTG ACGACTGGCG CGCACCCGCC GCCTGA
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| Protein sequence | MPTPAYIKIV GQTQGNITAG AFTADSVGNV FQQGHEDQIL VQEIKHEVTT PTDPQSGQPS
GQRVHKPFIF TSSLNKATPL MYQALANGEM LPTVEVSWYR TSSEGKQEHF FTTTLEDATI
VSINTVLPHA LDKDNENYTQ LVEVSLAYRK ITWAHDVANT EGSDDWRAPA A
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