| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2614 |
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| Symbol | vgrG-1 |
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| ID | 1046003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 2989308 |
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| End bp | 2991476 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637146036 |
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| Product | vgrG protein |
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| Protein accession | NP_744758 |
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| Protein GI | 26989333 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0110775 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAGCC AATCTGATTT GCGCTACAGC TTTGAGGCAC TCGTTGGCAA AGCTGCATTC
GAAGTGGTGT CGTTCGAACT CCGCGAGGGC ATCAGCGCAC CCTTTGAACT GGAGCTGAAA
CTGATCAGCT TCGAAAACGA CATCGACTTC GGCCATTTGC TCGACAAACC CGTGCTCTTC
ACCATCTTGG ACGGAGAACG CCCGGTACGG TACGTGCACG GCCTTGTCAG CAGCTTCAGC
CAGGGCGAGA GCGGCTTCTA CCGCACTTAC TATCACGCCT TGGTCGAACC GCAACTGGCC
CGCGCAAGGC TGCGCTCGAA CTGGCGCATC TTCCAGCACA AGACCGTTCC GCAAATTCTC
GAGCTGATGC TCAAGCGTCA AGGCATCGAC CAGTACGAAC TACGCGCCAG CATGGACCAT
CAGGTGCGCG AATTCTGCGT TCAGGCCGGT GAGACGGACT TGGCGTTCAT CGCCCGCCTT
GCCGCTGAAG AAGGCTTCGT CTACCGCTTT GCGCACAGTG AAAAGCTGCA CAAGCTGATC
ATCACCGATC GGCTGCAGTC CCTCGGCCTG ATCAGCCATG GCGCCATCAA GGCCGACCAT
GAAGACGAGG GTTTCGGCGA TGACGACGAG CCTGTAGGCC CTGACAGCGT CCTGTACCAA
GCGAACAGCG GTGGCGATCA AGCCATACCC TGCCTTCGCC GCTTGCGCTA CAGCGAGCAG
GTGCGCACCG CTCGCCAGGT GCAGCGCGAC CACACCTTCA CCCACCCGGC CTACCGCCAG
GAGCACAGAG CCGCCGGGCC CTTCCTGGAG CATCAGAGCA AAGATTACGA ATACTTCGAT
TACCCAGGCC GCTATAAACG CGATGCCGTG GGCAAGCCGT TCACCGAAAA CCGCATCACA
GCGCTGCGCC ATGATGTGCG TATTGCCGAG GTCCAGGGCG ATGACGTGCG CCTGCAACCG
GGGCTCAGTT TCACCCTGAC CGACCACCCG CGCGAAGACC TGAATGTGCA TTGGCGGGTC
AGCACGGTCC ACCACGAAGG CAGCCAGCCC ACCAGCCTGC AGGAAGAAGC TGCCGGGGCC
GACCAGGGCA CACGTTACGA GCAAAAGGCG GTACTGGTGC CAGGCAGAAC CGAGTGGCGC
CCAGCTCCGT TGCCCAAACC ACGCGTTGAC GGCCCGCACA TGGCCACCGT CGTCGGCCCG
CCTGGCGAGG AAATCTACTG CGATGAATGG GGCCGGGTAA AAGTCAGTTT CCCCTGGGAC
CGCGAAAGCC AGAACAACGA GTTCAGTTCG TGCTGGCTGC GGGTGTCTCA AGGCTGGGCG
GGTGGCAGCT GGGGCTCGAT GGCCATCCCC CGGATCGGCC AGGACGTGAT CATCCATTAC
GTCAACGGCG ACCCCGATCA GCCGATGATC ACCGGCCGTA CTTACTGCGG CAACCAGCTG
CCACCGTACG ACCTTCCCCG TCACAAGACC CGCATGACCA TCAAGAGCCA GACCCACAAG
GGCGATGGCT TCAACGAGCT GCGCTTCGAG GACGAACTGG GCCAGGAGGA AGTGTTCATT
CATGCCCAGA GGGACCAGAA CAATGTGGTC AAGCATGATG AGACTACGCA GGTCGGCAAT
GACCGCAAAG AGCAGGTCGA TAACGACGAA TCGATCCTGA TCGGCCACGA CCGTACGGAA
ACGGTTGGCA ATGACGAGCG CATCACCATT GGGCAGGATG CCGCGCTCGA CATCGGTAGA
AACCACACGA TCAGGATCGC CAAGGACCGT GTCGAAAACA TCGGCAATCA CCGTCACGAT
CAGATCGCCG CCAATCACCA CACCCGTATC GGTGGCAACT TCGAGCAACG GGTCGAAGGG
CATGCCGAGC TGGAAGCCCG TGGGGATATC CGCAGACGTA CTCGCCGTTA TGAACTTCGA
GCATCGGAAG CCGTGGTCAT CCAAGGCCCT GGTGGCTCCA TTCGAATCGA CGAAACAGGC
ATCACACTGG ACAGCCCGAC GATTCGCATC ACCGGCCAGA TGCTCAAGTC GGCAAATGGA
ACGACAAGCC CCTTTTCCAT CAGCAGTGCA CCGAACACTG GCAAGCCGCT GGAGCGCCTG
TGTGGGCGCC GCCCTGATGG CTCCTGTCCC CTACCCGATT GCCGCTGTAT CCGAGGGCAA
GTCCAATGA
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| Protein sequence | MPSQSDLRYS FEALVGKAAF EVVSFELREG ISAPFELELK LISFENDIDF GHLLDKPVLF
TILDGERPVR YVHGLVSSFS QGESGFYRTY YHALVEPQLA RARLRSNWRI FQHKTVPQIL
ELMLKRQGID QYELRASMDH QVREFCVQAG ETDLAFIARL AAEEGFVYRF AHSEKLHKLI
ITDRLQSLGL ISHGAIKADH EDEGFGDDDE PVGPDSVLYQ ANSGGDQAIP CLRRLRYSEQ
VRTARQVQRD HTFTHPAYRQ EHRAAGPFLE HQSKDYEYFD YPGRYKRDAV GKPFTENRIT
ALRHDVRIAE VQGDDVRLQP GLSFTLTDHP REDLNVHWRV STVHHEGSQP TSLQEEAAGA
DQGTRYEQKA VLVPGRTEWR PAPLPKPRVD GPHMATVVGP PGEEIYCDEW GRVKVSFPWD
RESQNNEFSS CWLRVSQGWA GGSWGSMAIP RIGQDVIIHY VNGDPDQPMI TGRTYCGNQL
PPYDLPRHKT RMTIKSQTHK GDGFNELRFE DELGQEEVFI HAQRDQNNVV KHDETTQVGN
DRKEQVDNDE SILIGHDRTE TVGNDERITI GQDAALDIGR NHTIRIAKDR VENIGNHRHD
QIAANHHTRI GGNFEQRVEG HAELEARGDI RRRTRRYELR ASEAVVIQGP GGSIRIDETG
ITLDSPTIRI TGQMLKSANG TTSPFSISSA PNTGKPLERL CGRRPDGSCP LPDCRCIRGQ
VQ
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