| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2554 |
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| Symbol | |
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| ID | 1045859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 2900916 |
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| End bp | 2902823 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637145977 |
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| Product | 4-hydroxyphenylpyruvate dioxygenase |
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| Protein accession | NP_744699 |
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| Protein GI | 26989274 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases
[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00914053 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAGCGTT CGATCGCTAC CGTGTCCTTG AGCGGCACTC TGCCGGAAAA GCTCGAAGCC
ATCGCCGCCG CCGGTTTTGA CGGCGTCGAG ATCTTCGAGA ACGATCTGCT CTATTACGCT
GGCAGCCCGC GCCAGGTGCG CCAGATGTGC GCCGACCTGG GCATTGCCAT CACCTTGTTC
CAGCCTTTCC GCGACTTTGA AGGCTGCCGC CGTGACCGCC TGCAGAAAAA CCTCGACCGC
GCCGAACGCA AGTTCGACCT GATGCAGGAG CTGGGTACCG ACCTGGTGCT GGTGTGCAGC
AACGTCCAGG CCGATGCCCT GGGTGACGAG CAACTGTTGG TCGACGACCT GCGCCTGCTG
GGCGAACATG CCGGCAAGCG TGGCCTGCGC ATTGGTTACG AAGCGCTGGC CTGGGGCCGC
CACGTCAACA CTTACCAGCA AGTGTGGAAC CTGGTGCGCC AGGCCGACCA CCCGGCACTC
GGGGTGATCC TCGACAGCTT CCACACCTTG TCGCTCAAAG GTGACCCCAG CGCGATCCGC
GACATCCCCG GCGACAAGAT CTTCTTCGTG CAAATGGCCG ATGCGCCGAT CCTGGCCATG
GATGTGCTGG AGTGGAGCCG CCACTTTCGC TGCTTCCCGG GGCAGGGCGA AATGGACATG
GCCGGTTTCC TGGCGCCGAT CCTCGCCACG GGTTACCGTG GCCCGCTGTC GCTGGAAATC
TTCAACGACG GCTTCCGCGC CGCACCGACC CGGCAGAATG CCGCCGACGG CTTGCGTTCG
CTGCTGTACC TCGAAGAACA GACCCGCTTG CGCCTGGAGC AGGAGAACAC GCCGATCGAA
CCTGGCGTGC TGTTCTCCCC GCCGCCGGCC AGCGCTTATG ACGGCGTGGA GTTCCTGGAG
TTCGCGGTCG ACGAAGCCGT CGGCGCGCGC CTGGGCAACT GGCTGAAGCG CCTGGGCTTT
GCCGAAGCCG GCAAGCACCG CAGCAAAGAA GTGCAACTGC TGCGCCAGGG TGATATCAAC
ATTGTGCTGA ACGCCGAACC GTATTCCTTC GGCCACAACT TCTTCGAGGC CCATGGCCCA
TCGCTGTGCG CCACTGCGCT GCGGGTCAAG GACCAGCAAG CGGCCTTGAA GCGGGCCACC
GCCTTCCGTG GCCAGCCGTT CCGCGGCCTG GTCGGCCCCA ACGAATGCGA AGTGCCGGCG
GTGCGTGCGC CCGATGGCAG CCTGCTGTAT CTGGTGGAGC AGGGCACTGC CGGCCACACC
CTGTACGATA CCGACTTCAG CCTGGACAAC AACGCAACCG CTACCGGCGG CCTGCGCCGC
ATCGACCACA TGGCCCTAGC CTTGCCGGCC GAGTCGCTGG ACAGCTGGGT GCTGTTCTAC
AAGAGCTTGT TCGACTTCGC CGCCGACGAC GAGGTGGTGC TGCCCGACCC GTATGGCCTG
GTCAAGAGCC GCGCCTTGCG CAGCCAGTGC GGCACTTTGC GCCTGCCGCT GAACATCTCG
GAAAACCGCA ACACCGCCAT CGCCCATGCG CTGTCAAGCT ACCGTGGTTC GGGCGTGCAT
CACATCGCTT TCGATTGTGA CGACATCTTC CGCGAAGTGG CGCGGGCCAA GCTGGCAGGG
GTACCGCTGC TGGAAATCCC GCTGAACTAC TACGACGACC TGGCGGCGCG TTTCGATTTC
GACGACGAGT TCCTCAGTGA GCTGGCGTAC TACAACGTGC TGTATGACCG CGACGCTCAA
GGTGGCGAGC TGTTCCACGT CTATACCGAG CCGTTCGAGG AGCGTTTCTT CTTCGAGATC
ATCCAGCGCA AGGCGGGGTA CGCTGGTTAC GGCGCTGCCA ACGTTGCGGT GCGCCTGGCA
GCCATGGCCA AGGCCCGTAG CGGGGCGGCG CGCAAGCCGG TGCTGTAG
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| Protein sequence | MQRSIATVSL SGTLPEKLEA IAAAGFDGVE IFENDLLYYA GSPRQVRQMC ADLGIAITLF
QPFRDFEGCR RDRLQKNLDR AERKFDLMQE LGTDLVLVCS NVQADALGDE QLLVDDLRLL
GEHAGKRGLR IGYEALAWGR HVNTYQQVWN LVRQADHPAL GVILDSFHTL SLKGDPSAIR
DIPGDKIFFV QMADAPILAM DVLEWSRHFR CFPGQGEMDM AGFLAPILAT GYRGPLSLEI
FNDGFRAAPT RQNAADGLRS LLYLEEQTRL RLEQENTPIE PGVLFSPPPA SAYDGVEFLE
FAVDEAVGAR LGNWLKRLGF AEAGKHRSKE VQLLRQGDIN IVLNAEPYSF GHNFFEAHGP
SLCATALRVK DQQAALKRAT AFRGQPFRGL VGPNECEVPA VRAPDGSLLY LVEQGTAGHT
LYDTDFSLDN NATATGGLRR IDHMALALPA ESLDSWVLFY KSLFDFAADD EVVLPDPYGL
VKSRALRSQC GTLRLPLNIS ENRNTAIAHA LSSYRGSGVH HIAFDCDDIF REVARAKLAG
VPLLEIPLNY YDDLAARFDF DDEFLSELAY YNVLYDRDAQ GGELFHVYTE PFEERFFFEI
IQRKAGYAGY GAANVAVRLA AMAKARSGAA RKPVL
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