| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2553 |
|---|
| Symbol | |
|---|
| ID | 1045856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 2899253 |
|---|
| End bp | 2900626 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637145976 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | NP_744698 |
|---|
| Protein GI | 26989273 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0427116 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00798136 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCACT CCAGCTCGCA AGCAAAGAAA GCGACCGCCA GTGGATGGAT AGGCTCGGCA
CTCGAGTACT ACGACTTCTT CATCTACGCC CAGGCCGCTG CGCTGATTTT CCCGCAGATT
TTCTTCCCTA ACACCGACCC GAAAATGGCC ATCATTGCCT CGTTGGCCAC CTATGGCGTG
GGCTACCTGG CACGCCCGAT CGGCGCCTTC GTACTGGGCC ACTGGGGTGA CACCCGCGGT
CGCAAGAACG TCCTGCTGCT GTGCATGTTC CTGATGGGCC TGTCGACCAT GGCTGTCGGC
CTGCTACCCA CCTACCACGA CATCGGCTAC CTCGCACCGG CCTTGCTGGT GGTGTTGCGC
CTGATCCAGG GCTTTGCCGT GGCCGGGGAA ATTTCCGGTG CCAGCTCGAT GATCATGGAG
CACGCGCCGT TTGGCCGAAG AGGCTACTAC GCCAGTTTCA CCCTGCAAGG TGTGCAAGCG
GGCCAGGTTC TGGCGGCGGC GGTATTCCTG CCACTGGCTT ACTTCATGCC CAGCGAAGCC
TTTACCGAAT GGGGCTGGCG CATTCCGTTC CTGATGAGCG CCATCGTGCT GATTGCAGGC
TTCATCATCC GTAAGGAAGT GCACGAAACC CCAGCGTTCG TGCAAGAAGA GAAACAGGAC
AAGGTTGCCA AGTCGCCCAT CAGCGAGGCC TTCCGCCACA GCTGGAAGCA CATGGTGCTG
GTGATGTTCA TGGCCCTGAT GAACGTGATC CCGGTCGTTG CCACCATCTT CGGTGCGGCC
TACGCGGTGC AGCCGGCGTA TGGCATCGGC TTCGACAAGA GCGTATACCT GTGGATTCCG
GTGGTCGGTA ACATCGTCGC GGTGCTGGTG ATCCCGTTCG TGGGCAACCT GTCGGACAAG
ATCGGCCGTC GCCCGACCAT GATCGCTGGC TGCCTGGGCT CTGGCCTGCT GGCCTTCGTC
TACCTGTATG CGATCAGCAT CCAGAACGTG CCAATGGCGT TCGCGGCCTC GATCGTCATG
TGGGGCATGG TCTACCAGGG TTACAACGCG GTGTTCCCAA GCTTCTACCC AGAGCTGTTC
CACACCCGCT ACCGCGTTAC CGCCATGGCC ATCGCGCAGA ACATCGGCAC CATGCTGACC
GCCATGCTGC CCGCGCTGTT CGCAATGGTT GCCCCACCCG GCTCGGACAA CATTCCGCTG
GTAGTCGGTG GGCTGGCCTT CTTCATCACC GGCGTGTGTG CCCTGGCAGC CTACATTGCC
CCGGAAACCC ACCGCCTGGC GATGGAAGAC CTGGGCAACC CGGACGCCAA GCCGATGGAA
AAGGCAGCCT ATGAAGCCAG CCGTAAAGGT AGCTTTCAGG CGGTGAGCCA CTGA
|
|---|
| Protein sequence | MAHSSSQAKK ATASGWIGSA LEYYDFFIYA QAAALIFPQI FFPNTDPKMA IIASLATYGV
GYLARPIGAF VLGHWGDTRG RKNVLLLCMF LMGLSTMAVG LLPTYHDIGY LAPALLVVLR
LIQGFAVAGE ISGASSMIME HAPFGRRGYY ASFTLQGVQA GQVLAAAVFL PLAYFMPSEA
FTEWGWRIPF LMSAIVLIAG FIIRKEVHET PAFVQEEKQD KVAKSPISEA FRHSWKHMVL
VMFMALMNVI PVVATIFGAA YAVQPAYGIG FDKSVYLWIP VVGNIVAVLV IPFVGNLSDK
IGRRPTMIAG CLGSGLLAFV YLYAISIQNV PMAFAASIVM WGMVYQGYNA VFPSFYPELF
HTRYRVTAMA IAQNIGTMLT AMLPALFAMV APPGSDNIPL VVGGLAFFIT GVCALAAYIA
PETHRLAMED LGNPDAKPME KAAYEASRKG SFQAVSH
|
|---|
| |