| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2216 |
|---|
| Symbol | |
|---|
| ID | 1045081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 2526956 |
|---|
| End bp | 2528083 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637145630 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | NP_744365 |
|---|
| Protein GI | 26988940 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.585123 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTAA ATGACGAGCA ACAACAGATC GCCGACGCGG TACGTGCGTT CGCCCAGGAA
CGCCTGAAGC CGTTTGCCGA GCAATGGGAC AAGGACCATC GCTTCCCGAA AGAGGCCATC
GACGAGATGG CCGAACTGGG CCTGTTCGGC ATGCTGGTGC CGGAGCAGTG GGGCGGTAGC
GACACCGGTT ATGTGGCCTA TGCCATGGCC TTGGAGGAAA TCGCTGCGGG CGATGGCGCC
TGCTCGACCA TCATGAGCGT GCACAACTCG GTGGGTTGCG TGCCGATCCT GCGCTTCGGC
AACGAGCAGC AGAAAGAGCA GTTCCTCACC CCGCTGGCGA CAGGTGCGAT GCTCGGTGCT
TTCGCCCTGA CCGAGCCGCA GGCTGGCTCC GATGCCAGCA GCCTGAAGAC CCGCGCACGC
CTGGAAGGCG ACCATTACGT GCTCAATGGC AGCAAGCAGT TCATTACCTC GGGGCAGAAC
GCCGGCGTAG TGATCGTGTT TGCGGTCACC GACCCGGAGG CCGGCAAGCG TGGCATCAGC
GCCTTCATCG TGCCGACCGA TTCGCCGGGC TACCAGGTAG CGCGGGTGGA GGACAAACTC
GGCCAGCACG CCTCCGACAC CTGCCAGATC GTTTTCGACA ATGTGCAAGT GCCAGTGGCC
AACCGGCTGG GGGCGGAGGG TGAAGGCTAC AAGATCGCCC TGGCCAACCT TGAAGGCGGC
CGTATCGGCA TCGCCTCGCA AGCGGTGGGT ATGGCCCGCG CGGCGTTCGA AGTGGCGCGG
GACTATGCCA ACGAGCGCCA GAGCTTTGGC AAACCGCTGA TCGAGCACCA GGCCGTGGCG
TTTCGCCTGG CCGACATGGC AACGAAAATT TCCGTTGCCC GGCAGATGGT ATTGCACGCC
GCTGCCCTTC GTGATGCGGG GCGCCCGGCG CTGGTGGAAG CGTCGATGGC CAAGCTGTTC
GCCTCGGAAA TGGCCGAAAA GGTCTGTTCG GACGCCTTGC AGACCCTGGG CGGTTATGGC
TATCTGAGTG ACTTCCCGCT GGAGCGGATC TACCGCGACG TTCGGGTTTG CCAGATCTAC
GAAGGCACCA GCGACATTCA GCGCATGGTC ATTGCGCGCA ATCTTTGA
|
|---|
| Protein sequence | MLVNDEQQQI ADAVRAFAQE RLKPFAEQWD KDHRFPKEAI DEMAELGLFG MLVPEQWGGS
DTGYVAYAMA LEEIAAGDGA CSTIMSVHNS VGCVPILRFG NEQQKEQFLT PLATGAMLGA
FALTEPQAGS DASSLKTRAR LEGDHYVLNG SKQFITSGQN AGVVIVFAVT DPEAGKRGIS
AFIVPTDSPG YQVARVEDKL GQHASDTCQI VFDNVQVPVA NRLGAEGEGY KIALANLEGG
RIGIASQAVG MARAAFEVAR DYANERQSFG KPLIEHQAVA FRLADMATKI SVARQMVLHA
AALRDAGRPA LVEASMAKLF ASEMAEKVCS DALQTLGGYG YLSDFPLERI YRDVRVCQIY
EGTSDIQRMV IARNL
|
|---|
| |