Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2193 |
Symbol | |
ID | 1045055 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2498097 |
End bp | 2500550 |
Gene Length | 2454 bp |
Protein Length | 817 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637145607 |
Product | TonB-dependent siderophore receptor |
Protein accession | NP_744342 |
Protein GI | 26988917 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.819603 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGTCAGGAA GCTCATTCGT GCCTCTGATG CTCAAGCCCT TGCACCGCCG TCGCGGTTCT TTTCACCATG CCTTGATGTC TTGCAGTGCC GTGGCCCTGT TGCTCGGCCC CCTGCACGCA GGGGCCGCGA CGGCTGCCGA ACAGACCCAG ATGCAGGCCC GCCAGGTCCA GCTCGACCTG CCAGCCCAAC CGCTGGACCA GGCGCTGACC ACTTTCGCCG ACCAGGCCGG CCTGCACCTG CTGTACACCA CAGGCGATGT CGCCGGCCAG GTCAGCCCGG CGTTGCAGGG CAACTACAGT GTCGAGCAGG CCCTGCAGCA GTTGCTGGCC GGCAGCGGCA TGAGCTGGCA GTTCAGCGAG GCTCGCACCG TCACCCTGCG CAAGGCCGAG GCCGCGCCGC AGGCGGTCAA CCTCAAGCCG ATCGAAGTCA GCGTAGCCTC GCGCACCAGC ACCGCCATCA GCGAAATCCC CGGGACCGTC TGGGTAGTGG ACCAGCAGCA ATTGCGCGAG CAGATCGACA GCGGCGTCAG CCTGAAGGAA GCCATCGGCA AGCTGGTGCC GGGCCTTGAC CTGGCGCCGG AAGGGCGCAC CAATTACGGC CAGAACATGC GTGGGCGCAA CGTGCTGGTG ATGATCGACG GGGTCAGCCA GAACAGCTCC CGCGGCCTGT CGCGCCAGTT CGACAGCATT TCGCCGTTCA ACGTCGAGCG CGTCGAAGTG CTGTCTGGCG CCAGCGCCAT CTACGGCGGT GGCGCCACCG GCGGCATCAT CAACATCGTG ACCAAGAAGG GCGAGCCTGG CCCGGCGCGC TTCGAAACCC AGTTGGGGGC CAGCAGCGGT TTCAACAACA GCGACGACCT GGCCACCCGC TTCGCCCAGT CCGTCAGCGG TGGTAACGAG CGGGTCAATG CCCGGTTGGG TATTTCCGGT GAGCAGAACG AAGCCTTCTA CGATGGTGCT GGCGACCAGA TCTTCATCGA CAACACCCAG ACCGACCTGC AGTACAATCG CACCATCGAC GTACTCGGTA CCTTGGGCCT GCAACTGAAC GACCAGCAGA GCCTCGACCT GTTGGCCCAG TACTACGACT CGGGCAACCA CGGCAGCACG GGTATCTACT TCCCCAACCT GAACTACAAC GCGCCATCCG ACCTGGAAGA CGCCGAGCTG CGCAGCGGTT ATTCATCGGA CCTGGAGCCG CGTACGCGGC GCTTGCTGCT CAACGCCAAT TACCACCACA CCGACGTGCT GGGCCAGGAC TTCTACTTGC AGGCTTCGTA CCGCAAGGAA GACGACAACT TCTACCCGTT CCCGTACTAC AACCGTGCCA CGCCCACCGG CTCGCGCGGG GTGTACTTTG CCGCCTCGCA GCAGAACTTC GAAGTCACCA GCCTCAAGGG CCTGTTTGCC AAACAGTGGG ATACGCTGAA GCTGACCTAC GGCGTTGACC TGGACCGCGA GCGCTTCAAC GCCGAGCAGA CCACCTTCAA CGCCCAGACC TCGTCCGAGT CGGGTGGCCT GGAGCTGGAA AAAGACAGCA AGGCCGACCG CTACCCCAGC TACCGGGTGG ATGGTGTGTC GGTGTATGCC CAGCTGGACT GGCATGCCAC CGACAACCTG ACATTGTCCG GTGGTGCCCG GCGGCAGCAG ATGGACGTTG ATGTCAGCGA CTTCAAGGGT GTGCCAGGTG GCAGTAACGA CTATCAGGTC AACCTGTTCA ACGTCGGTGC CATCTACGAC TTCAAGAACG GCCACCAGGT GTGGAGCAAC TATGGCGAAG GCTTCGACCT GCCTGACCCG GCCAAGTACT ACGGCAAGCC GGGCCTGAGC GTGGCCGATA ACCCGTTGGC CGGTATCAAG AGCCGCCAGG TGGAATTGGG CTGGCGCTAT GCCGACCTGG ATTGGGATGC GCAGGCAGCG CTGTACTACA TCTGGTCGGA CAAGATCATC AACGTCGATT CGCAAACGCT GACCATCGAC GTGGAAGAGC AGAAAAGCCG CGACTTCGGC TTTGAAGGTG CACTGACCCG GCACTTCCAG ACCGGCTGGG AAGCTGGCGG CACATTGCAC ATGACACGCT CCGAGGAAGA GGCCGAGGAC GGCGGCTGGA TCAAGCGCGA TGCCCGTTAT GCCTCTTTGT CCAAGGCCAC TGCGTTCGTC GGCTGGAAGG GCGATGGCCG CAGTGCACGC TTGCAGGCCA ACCATGCCTT CAGCCTGAAG GACGATGCCG ATCACGAGAT TGACGGCTAC ACCACCTTCG ACCTGCTGGG CAGCCAGGAC ACCGGTTTCG GCACCTTCAG TGCCGGTATC CAGAACCTGC TGGACAAGCA GTACAGCACG GTATGGGGAC AGCGTGCGAC GTTGTTCTAT TCGCCGACCT ACGGGCCGGC GTATCTGTAT GACTACCAGG GGCGTGGGCG GACCTATACG CTGAGCTGGA GCATGGCTTA CTGA
|
Protein sequence | MSGSSFVPLM LKPLHRRRGS FHHALMSCSA VALLLGPLHA GAATAAEQTQ MQARQVQLDL PAQPLDQALT TFADQAGLHL LYTTGDVAGQ VSPALQGNYS VEQALQQLLA GSGMSWQFSE ARTVTLRKAE AAPQAVNLKP IEVSVASRTS TAISEIPGTV WVVDQQQLRE QIDSGVSLKE AIGKLVPGLD LAPEGRTNYG QNMRGRNVLV MIDGVSQNSS RGLSRQFDSI SPFNVERVEV LSGASAIYGG GATGGIINIV TKKGEPGPAR FETQLGASSG FNNSDDLATR FAQSVSGGNE RVNARLGISG EQNEAFYDGA GDQIFIDNTQ TDLQYNRTID VLGTLGLQLN DQQSLDLLAQ YYDSGNHGST GIYFPNLNYN APSDLEDAEL RSGYSSDLEP RTRRLLLNAN YHHTDVLGQD FYLQASYRKE DDNFYPFPYY NRATPTGSRG VYFAASQQNF EVTSLKGLFA KQWDTLKLTY GVDLDRERFN AEQTTFNAQT SSESGGLELE KDSKADRYPS YRVDGVSVYA QLDWHATDNL TLSGGARRQQ MDVDVSDFKG VPGGSNDYQV NLFNVGAIYD FKNGHQVWSN YGEGFDLPDP AKYYGKPGLS VADNPLAGIK SRQVELGWRY ADLDWDAQAA LYYIWSDKII NVDSQTLTID VEEQKSRDFG FEGALTRHFQ TGWEAGGTLH MTRSEEEAED GGWIKRDARY ASLSKATAFV GWKGDGRSAR LQANHAFSLK DDADHEIDGY TTFDLLGSQD TGFGTFSAGI QNLLDKQYST VWGQRATLFY SPTYGPAYLY DYQGRGRTYT LSWSMAY
|
| |