Gene PP_2193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_2193 
Symbol 
ID1045055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2498097 
End bp2500550 
Gene Length2454 bp 
Protein Length817 aa 
Translation table11 
GC content63% 
IMG OID637145607 
ProductTonB-dependent siderophore receptor 
Protein accessionNP_744342 
Protein GI26988917 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.819603 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCAGGAA GCTCATTCGT GCCTCTGATG CTCAAGCCCT TGCACCGCCG TCGCGGTTCT 
TTTCACCATG CCTTGATGTC TTGCAGTGCC GTGGCCCTGT TGCTCGGCCC CCTGCACGCA
GGGGCCGCGA CGGCTGCCGA ACAGACCCAG ATGCAGGCCC GCCAGGTCCA GCTCGACCTG
CCAGCCCAAC CGCTGGACCA GGCGCTGACC ACTTTCGCCG ACCAGGCCGG CCTGCACCTG
CTGTACACCA CAGGCGATGT CGCCGGCCAG GTCAGCCCGG CGTTGCAGGG CAACTACAGT
GTCGAGCAGG CCCTGCAGCA GTTGCTGGCC GGCAGCGGCA TGAGCTGGCA GTTCAGCGAG
GCTCGCACCG TCACCCTGCG CAAGGCCGAG GCCGCGCCGC AGGCGGTCAA CCTCAAGCCG
ATCGAAGTCA GCGTAGCCTC GCGCACCAGC ACCGCCATCA GCGAAATCCC CGGGACCGTC
TGGGTAGTGG ACCAGCAGCA ATTGCGCGAG CAGATCGACA GCGGCGTCAG CCTGAAGGAA
GCCATCGGCA AGCTGGTGCC GGGCCTTGAC CTGGCGCCGG AAGGGCGCAC CAATTACGGC
CAGAACATGC GTGGGCGCAA CGTGCTGGTG ATGATCGACG GGGTCAGCCA GAACAGCTCC
CGCGGCCTGT CGCGCCAGTT CGACAGCATT TCGCCGTTCA ACGTCGAGCG CGTCGAAGTG
CTGTCTGGCG CCAGCGCCAT CTACGGCGGT GGCGCCACCG GCGGCATCAT CAACATCGTG
ACCAAGAAGG GCGAGCCTGG CCCGGCGCGC TTCGAAACCC AGTTGGGGGC CAGCAGCGGT
TTCAACAACA GCGACGACCT GGCCACCCGC TTCGCCCAGT CCGTCAGCGG TGGTAACGAG
CGGGTCAATG CCCGGTTGGG TATTTCCGGT GAGCAGAACG AAGCCTTCTA CGATGGTGCT
GGCGACCAGA TCTTCATCGA CAACACCCAG ACCGACCTGC AGTACAATCG CACCATCGAC
GTACTCGGTA CCTTGGGCCT GCAACTGAAC GACCAGCAGA GCCTCGACCT GTTGGCCCAG
TACTACGACT CGGGCAACCA CGGCAGCACG GGTATCTACT TCCCCAACCT GAACTACAAC
GCGCCATCCG ACCTGGAAGA CGCCGAGCTG CGCAGCGGTT ATTCATCGGA CCTGGAGCCG
CGTACGCGGC GCTTGCTGCT CAACGCCAAT TACCACCACA CCGACGTGCT GGGCCAGGAC
TTCTACTTGC AGGCTTCGTA CCGCAAGGAA GACGACAACT TCTACCCGTT CCCGTACTAC
AACCGTGCCA CGCCCACCGG CTCGCGCGGG GTGTACTTTG CCGCCTCGCA GCAGAACTTC
GAAGTCACCA GCCTCAAGGG CCTGTTTGCC AAACAGTGGG ATACGCTGAA GCTGACCTAC
GGCGTTGACC TGGACCGCGA GCGCTTCAAC GCCGAGCAGA CCACCTTCAA CGCCCAGACC
TCGTCCGAGT CGGGTGGCCT GGAGCTGGAA AAAGACAGCA AGGCCGACCG CTACCCCAGC
TACCGGGTGG ATGGTGTGTC GGTGTATGCC CAGCTGGACT GGCATGCCAC CGACAACCTG
ACATTGTCCG GTGGTGCCCG GCGGCAGCAG ATGGACGTTG ATGTCAGCGA CTTCAAGGGT
GTGCCAGGTG GCAGTAACGA CTATCAGGTC AACCTGTTCA ACGTCGGTGC CATCTACGAC
TTCAAGAACG GCCACCAGGT GTGGAGCAAC TATGGCGAAG GCTTCGACCT GCCTGACCCG
GCCAAGTACT ACGGCAAGCC GGGCCTGAGC GTGGCCGATA ACCCGTTGGC CGGTATCAAG
AGCCGCCAGG TGGAATTGGG CTGGCGCTAT GCCGACCTGG ATTGGGATGC GCAGGCAGCG
CTGTACTACA TCTGGTCGGA CAAGATCATC AACGTCGATT CGCAAACGCT GACCATCGAC
GTGGAAGAGC AGAAAAGCCG CGACTTCGGC TTTGAAGGTG CACTGACCCG GCACTTCCAG
ACCGGCTGGG AAGCTGGCGG CACATTGCAC ATGACACGCT CCGAGGAAGA GGCCGAGGAC
GGCGGCTGGA TCAAGCGCGA TGCCCGTTAT GCCTCTTTGT CCAAGGCCAC TGCGTTCGTC
GGCTGGAAGG GCGATGGCCG CAGTGCACGC TTGCAGGCCA ACCATGCCTT CAGCCTGAAG
GACGATGCCG ATCACGAGAT TGACGGCTAC ACCACCTTCG ACCTGCTGGG CAGCCAGGAC
ACCGGTTTCG GCACCTTCAG TGCCGGTATC CAGAACCTGC TGGACAAGCA GTACAGCACG
GTATGGGGAC AGCGTGCGAC GTTGTTCTAT TCGCCGACCT ACGGGCCGGC GTATCTGTAT
GACTACCAGG GGCGTGGGCG GACCTATACG CTGAGCTGGA GCATGGCTTA CTGA
 
Protein sequence
MSGSSFVPLM LKPLHRRRGS FHHALMSCSA VALLLGPLHA GAATAAEQTQ MQARQVQLDL 
PAQPLDQALT TFADQAGLHL LYTTGDVAGQ VSPALQGNYS VEQALQQLLA GSGMSWQFSE
ARTVTLRKAE AAPQAVNLKP IEVSVASRTS TAISEIPGTV WVVDQQQLRE QIDSGVSLKE
AIGKLVPGLD LAPEGRTNYG QNMRGRNVLV MIDGVSQNSS RGLSRQFDSI SPFNVERVEV
LSGASAIYGG GATGGIINIV TKKGEPGPAR FETQLGASSG FNNSDDLATR FAQSVSGGNE
RVNARLGISG EQNEAFYDGA GDQIFIDNTQ TDLQYNRTID VLGTLGLQLN DQQSLDLLAQ
YYDSGNHGST GIYFPNLNYN APSDLEDAEL RSGYSSDLEP RTRRLLLNAN YHHTDVLGQD
FYLQASYRKE DDNFYPFPYY NRATPTGSRG VYFAASQQNF EVTSLKGLFA KQWDTLKLTY
GVDLDRERFN AEQTTFNAQT SSESGGLELE KDSKADRYPS YRVDGVSVYA QLDWHATDNL
TLSGGARRQQ MDVDVSDFKG VPGGSNDYQV NLFNVGAIYD FKNGHQVWSN YGEGFDLPDP
AKYYGKPGLS VADNPLAGIK SRQVELGWRY ADLDWDAQAA LYYIWSDKII NVDSQTLTID
VEEQKSRDFG FEGALTRHFQ TGWEAGGTLH MTRSEEEAED GGWIKRDARY ASLSKATAFV
GWKGDGRSAR LQANHAFSLK DDADHEIDGY TTFDLLGSQD TGFGTFSAGI QNLLDKQYST
VWGQRATLFY SPTYGPAYLY DYQGRGRTYT LSWSMAY