| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2119 |
|---|
| Symbol | |
|---|
| ID | 1044972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 2416963 |
|---|
| End bp | 2418726 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637145532 |
|---|
| Product | lipid ABC transporter ATPase/inner membrane protein |
|---|
| Protein accession | NP_744268 |
|---|
| Protein GI | 26988843 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.075672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGAAT CGGTTTCCCT GCGCCAACGC CGTGCCTTGC GCCTGGCCTG GCAGTTCGTT
CGCCCTTATC GCCGCCAGGT GCTGCTGGCA TTGCTGGCGC TGGTGGTCAC CGCTGCCATC
ACCCTGTCGA TGGGCCAAGG TATCCGCCTG CTGGTGGATC AAGGCTTCAT GACCCGCTCC
GCGCACCAGC TCAATCAGAC CATCGGGCTG TTCCTGCTGC TGGTGCTGGC GCTGGCGGTG
GGTACCTTCA GCCGTTTCTA TCTGGTGTCG TGGATTGGCG AGCGTTGTGT GGCCGATATC
CGTCGTGCGG TCTTCGATCA CCTGATCGGC CTGCACCCAG GTTTTTTCGA GGACAACCGC
AGCTCCGAGA TCCAGTCTCG GCTGACTGCG GACACCACCT TGCTGCAATC AGTGATCGGT
TCATCGCTGT CGATGTTCCT GCGCAACGCG CTGATGGTCA TTGGCGGTGT GGTATTGCTG
TTCATCACCA ACCCCAAGCT CACCAGCATC GTGGTGGTAA CGCTGCCGCT GGTGTTGGCA
CCGATCCTGT TGTTCGGCCG TCGGGTGCGC AGCCTGTCGC GGCAGAGCCA GGACAGAGTC
GCCGATGTGG GCAGCTACGT GGCTGAGACG CTGGGGCAGA TCAAGACCGT GCAGGCCTAC
AACCACCAGG CGCACGACCG CGAACTGTTC GCCGATACGG TCGAAGCAGC GTTTACTGTT
GCCCGCAAGC GGATTACACA GCGTGCCTGG CTGATTACCC TGGTGATCGT GCTGGTGTTG
GGGGCGGTGG GGGTGATGCT GTGGGTCGGC GGCATGGATG TGATCGCCGG GCGTATATCC
GCAGGCGAGC TGGCAGCATT CGTGTTCTAC AGCCTGATCG TCGGCAGCGC CTTCGGTACC
CTCAGTGAGG TGATCGGCGA GCTGCAACGG GCCGCGGGTG CAGCCGAGCG CATTGCCGAA
CTGTTGGCCG CGCGCAGTGC CATCCTGCCC CCCGACGTGG CGCAGGTGCT GCCGCAGCCG
CGGGCCAGCG GTCATATCGA GCTGCAACAG GTCGTGTTCG CTTACCCTTC ACGGCCCACG
GTGGCAGCTG TCGACGGCCT GAGCCTGACC ATCGAACCCG GGCAGACCGT CGCCCTGGTA
GGCCCTTCCG GGGCAGGCAA GTCGACCCTG TTCGATCTGT TGCTGCGCTT TTACGACCCA
CAGCAAGGGC GCATCCTGCT CGATGGTCAG CCGGTTACCG ACTTTGATCC CGACCAGCTA
CGCCGGCAGT TCGCTTTGGT GGCACAAAAC CCCTCGCTGT TCCGTGGCAC GGTGGAGGCC
AACATTCGTT ATGGCCGGCC CGAGGCGACC TTGGCTGAAG TCGAAGCAGC AGCCCGCGGC
GCCCATGCCG ACGAATTCAT CCGGCAATTG CCCCAAGGCT ACCAGACCCC GCTGGGGGAG
GGCGGCATCG GCCTTTCCGG CGGGCAACGC CAGCGCCTGG CGATTGCCCG GGCCTTGCTG
GTCGATGCGC CGATCCTGTT GCTGGACGAA GCCACCAGTG CCCTTGATGC ACAAAGTGAA
TACTTGATCC AGCAAGCGCT GCCCAGCCTG ATGGCCGGCC GTACCACGCT GGTGATCGCC
CATCGCCTGG CCACGGTACA GCATGCCGAG CGCATCGCGG TCATCGACCA GGGCCGGCTG
GTGGCGGTGG GCACCCACCG TCAGTTGATT GAGGACAGCC CGTTGTATGC GCGGCTGGCA
GCGCTGCAAT TCACCACGGG CTAG
|
|---|
| Protein sequence | MPESVSLRQR RALRLAWQFV RPYRRQVLLA LLALVVTAAI TLSMGQGIRL LVDQGFMTRS
AHQLNQTIGL FLLLVLALAV GTFSRFYLVS WIGERCVADI RRAVFDHLIG LHPGFFEDNR
SSEIQSRLTA DTTLLQSVIG SSLSMFLRNA LMVIGGVVLL FITNPKLTSI VVVTLPLVLA
PILLFGRRVR SLSRQSQDRV ADVGSYVAET LGQIKTVQAY NHQAHDRELF ADTVEAAFTV
ARKRITQRAW LITLVIVLVL GAVGVMLWVG GMDVIAGRIS AGELAAFVFY SLIVGSAFGT
LSEVIGELQR AAGAAERIAE LLAARSAILP PDVAQVLPQP RASGHIELQQ VVFAYPSRPT
VAAVDGLSLT IEPGQTVALV GPSGAGKSTL FDLLLRFYDP QQGRILLDGQ PVTDFDPDQL
RRQFALVAQN PSLFRGTVEA NIRYGRPEAT LAEVEAAARG AHADEFIRQL PQGYQTPLGE
GGIGLSGGQR QRLAIARALL VDAPILLLDE ATSALDAQSE YLIQQALPSL MAGRTTLVIA
HRLATVQHAE RIAVIDQGRL VAVGTHRQLI EDSPLYARLA ALQFTTG
|
|---|
| |