Gene PP_2101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_2101 
Symbol 
ID1044953 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2399656 
End bp2400279 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content55% 
IMG OID637145515 
ProductLuxR family DNA-binding response regulator 
Protein accessionNP_744251 
Protein GI26988826 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00862279 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.220235 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACATGC ACTCCATATT TATCGTTGAC GACCATCCGG TGATTCGCCT GGCCGTGCGT 
ATGCTGCTGG AAAACCAGAA TTACAAGATT GTCGGCGAGT CGGACAACGG CGTAGACGCC
ATGCAGATGA TCCGCGAGAG CAACCCCGAC CTGGTCATTC TCGACATCAG CATCCCCAAG
CTAGACGGCC TGGAGGTGCT GGCCCGCTTT CAGAGCATGG CCCTGCCCTT GAAGGTTCTG
GTGCTGACTG CACAGTCCCC GGCATTGTTT GCCGTACGTT GCATGCACTC GGGCGCGGCG
GGTTATGTCT GCAAACAGGA AGACCTGAGC GAACTGCTCA GTGCAATCAA GGCTGTACTG
GCCGGTTATA ACTACTTCCC CAGCCAGGCA ATAAAAAACA ACCAGACCAC CGACAGTGAC
CTGCAACTTT TCCGCCAGGT AAATGACCGC GAACTGATGG TGCTTCAACT TTTCGCCCAA
GGCCGCAGCA ACAAGGAAAT TGCCAAGGGC ATGTTTCTCA GCAGCAAGAC TGTCAGTACC
TACAAGAAGC GCCTCATGCA CAAACTGCAA GTCAATACGC TGGTCGATCT GATCGAGATG
GCCAAGCGCA ACGCGCTGGT CTGA
 
Protein sequence
MNMHSIFIVD DHPVIRLAVR MLLENQNYKI VGESDNGVDA MQMIRESNPD LVILDISIPK 
LDGLEVLARF QSMALPLKVL VLTAQSPALF AVRCMHSGAA GYVCKQEDLS ELLSAIKAVL
AGYNYFPSQA IKNNQTTDSD LQLFRQVNDR ELMVLQLFAQ GRSNKEIAKG MFLSSKTVST
YKKRLMHKLQ VNTLVDLIEM AKRNALV