Gene PP_2014 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_2014 
Symbol 
ID1042941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2285713 
End bp2286600 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content66% 
IMG OID637145428 
Productrhomboid family protein 
Protein accessionNP_744164 
Protein GI26988739 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATTA TCGAAGTGAT GCGCCTGCCG CTGTCGGTTG ACCTCAGCGG CTTCGTCCAC 
CTGTTGCAAC GCCTGCAGGT GCCGCACCGG GTCAGCGAGG AGGGTGATGC CCAGGTCCTC
TGGGCCCCCG ACACCCTGGC CGAAGATGTG CTGCAGCTCT ACCAGCGCTA CCCCGACGGC
AACGCCGACC TGCCGGCCAC CGCTGACCCT GTAGGGGCGG GGGCACCGGC GAATGCCCCC
ACACAACCTT CCCTGGCAGC CCAGGCCAAG GCCTGCAAGA TCACCACCCT GACCCTGCTG
CTGTGCTTCA TCGTCGCCGG CCTCACGGGC CTTGGCGACA ACTTCACCAC CATCAGCTGG
TTCACCTTCC TCGACTTCCG TGTCCAGGGC GACTACCTGT ACTTCAGCCC GTTGGCGCAA
AGCCTGGATG AAGGCCAGTG GTGGCGCCTG GTATCGCCCA TGCTGCTGCA TTTCGGTGTG
CTGCACCTGG CCATGAACAG CCTGTGGTAC TGGGAGCTGG GCAAACGCAT CGAACTGCGC
CAGGGCCCGT GGGCGTTGCT GGGCCTGACC CTGCTGTTCA GCCTGGTCTC CAACCTGGCC
CAGCACTACA CCAGCGGGCC GAGCCTGTTT GGCGGCCTGT CCGGCGTGCT GTACGGCCTG
CTCGGGCATA TCTGGCTGTA CCAGTGGCTG GCGCCTGACC GTTACTTCAA CCTGCCCAAG
GGCGTGCTGG TGATGATGCT GATCTGGCTG GTGGTATGCC TGACCGGCGT GGTCGGCACG
CTCGGCCTTG GCCAGATCGC CAATGCCGCC CACGTCGGCG GGCTGCTCAT CGGATGCCTG
ACCGGGCTCT TGGGTGGGGC GCTGGCCCGG CGTAAACTGT CGGCTTGA
 
Protein sequence
MNIIEVMRLP LSVDLSGFVH LLQRLQVPHR VSEEGDAQVL WAPDTLAEDV LQLYQRYPDG 
NADLPATADP VGAGAPANAP TQPSLAAQAK ACKITTLTLL LCFIVAGLTG LGDNFTTISW
FTFLDFRVQG DYLYFSPLAQ SLDEGQWWRL VSPMLLHFGV LHLAMNSLWY WELGKRIELR
QGPWALLGLT LLFSLVSNLA QHYTSGPSLF GGLSGVLYGL LGHIWLYQWL APDRYFNLPK
GVLVMMLIWL VVCLTGVVGT LGLGQIANAA HVGGLLIGCL TGLLGGALAR RKLSA