Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2014 |
Symbol | |
ID | 1042941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2285713 |
End bp | 2286600 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637145428 |
Product | rhomboid family protein |
Protein accession | NP_744164 |
Protein GI | 26988739 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATTA TCGAAGTGAT GCGCCTGCCG CTGTCGGTTG ACCTCAGCGG CTTCGTCCAC CTGTTGCAAC GCCTGCAGGT GCCGCACCGG GTCAGCGAGG AGGGTGATGC CCAGGTCCTC TGGGCCCCCG ACACCCTGGC CGAAGATGTG CTGCAGCTCT ACCAGCGCTA CCCCGACGGC AACGCCGACC TGCCGGCCAC CGCTGACCCT GTAGGGGCGG GGGCACCGGC GAATGCCCCC ACACAACCTT CCCTGGCAGC CCAGGCCAAG GCCTGCAAGA TCACCACCCT GACCCTGCTG CTGTGCTTCA TCGTCGCCGG CCTCACGGGC CTTGGCGACA ACTTCACCAC CATCAGCTGG TTCACCTTCC TCGACTTCCG TGTCCAGGGC GACTACCTGT ACTTCAGCCC GTTGGCGCAA AGCCTGGATG AAGGCCAGTG GTGGCGCCTG GTATCGCCCA TGCTGCTGCA TTTCGGTGTG CTGCACCTGG CCATGAACAG CCTGTGGTAC TGGGAGCTGG GCAAACGCAT CGAACTGCGC CAGGGCCCGT GGGCGTTGCT GGGCCTGACC CTGCTGTTCA GCCTGGTCTC CAACCTGGCC CAGCACTACA CCAGCGGGCC GAGCCTGTTT GGCGGCCTGT CCGGCGTGCT GTACGGCCTG CTCGGGCATA TCTGGCTGTA CCAGTGGCTG GCGCCTGACC GTTACTTCAA CCTGCCCAAG GGCGTGCTGG TGATGATGCT GATCTGGCTG GTGGTATGCC TGACCGGCGT GGTCGGCACG CTCGGCCTTG GCCAGATCGC CAATGCCGCC CACGTCGGCG GGCTGCTCAT CGGATGCCTG ACCGGGCTCT TGGGTGGGGC GCTGGCCCGG CGTAAACTGT CGGCTTGA
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Protein sequence | MNIIEVMRLP LSVDLSGFVH LLQRLQVPHR VSEEGDAQVL WAPDTLAEDV LQLYQRYPDG NADLPATADP VGAGAPANAP TQPSLAAQAK ACKITTLTLL LCFIVAGLTG LGDNFTTISW FTFLDFRVQG DYLYFSPLAQ SLDEGQWWRL VSPMLLHFGV LHLAMNSLWY WELGKRIELR QGPWALLGLT LLFSLVSNLA QHYTSGPSLF GGLSGVLYGL LGHIWLYQWL APDRYFNLPK GVLVMMLIWL VVCLTGVVGT LGLGQIANAA HVGGLLIGCL TGLLGGALAR RKLSA
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