| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2001 |
|---|
| Symbol | metZ |
|---|
| ID | 1043012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 2269195 |
|---|
| End bp | 2270406 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637145411 |
|---|
| Product | O-succinylhomoserine sulfhydrylase |
|---|
| Protein accession | NP_744151 |
|---|
| Protein GI | 26988726 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01325] O-succinylhomoserine sulfhydrylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGATC AATGGGATGC CGGGCGACTG GACAGTGACC TCGAGGGTGT CGGTTTCGAC
ACCCTGGCGG TACGCGCTGG CCAAAACCGT ACCCCGGAAG GCGAGCACAG CGAAGCGCTG
TTCCTGACCT CCAGCTATGT GTTCCGCACG GCAGCCGATG CTGCTGCGCG CTTTGCCGGC
GAAACGCCGG GCAACGTCTA CTCGCGCTAC ACCAACCCGT CGGTGCGTGC CTTCGAGGAG
CGCCTGGCGG CCATGGAAGG TGCCGAACAG GCCGTGGGTA CGTCCACCGG CATGGCGGCG
ATCCTGGCCG TGGTCATGTC GCTGTGCAGC GCCGGTGACC ATGTGCTGGT GTCGCAGAGC
GTATTCGGCT CCACCATCAG CCTGTTCGAG AAGTACTTCA AGCGCTTTGG TGTAGAAGTG
GACTACGTGC CACTGGTCGA CCTCACCGGT TGGGAAAAGG CCATCAAGGC CAACACCAAG
CTGCTGATCG TCGAATCGCC CTCCAACCCG CTGGCCGAGT TGGTCGATAT CACCGCGCTC
AGCGAAATCG CCCATGCTCA GGGTGCCATG CTGGTGGTGG ACAACTGTTT CAGTACCCCG
GCGTTGCAGC AGCCGCTGAA GCTGGGTGCC GACATTGTGT TCCACTCGGC CACCAAGTTC
ATCGACGGCC AGGGCCGCTG CATGGGCGGT GTGGTTGCCG GCCGTACTGA GCAAATGAAA
GAAGTGGTGG GTTTCCTGCG AACCGCAGGT CCAACCCTCA GCCCGTTCAA CGCCTGGATC
TTCACCAAGG GCCTGGAAAC GCTGCGCCTG CGTATGCGTG CGCACTGCGA AAGCGCTCAG
GCCCTGGCCG AATGGCTGGA GCAGCAGGAC GGCGTGGAGA AGGTGCATTA CGCCGGCCTG
CCCAGCCACC CGCAGCACGA ACTGGCCAAG CGCCAGATGA GCGGTTTTGG TGCAGTGGTC
AGCTTTGAAG TCAAGGGGGG CAAAGAGGGC GCCTGGCGTT TCATCGACGC TACCCGAGTG
ATTTCCATCA CGACCAACCT GGGTGACAGC AAAACCACCA TCGCTCATCC GGCGACCACC
TCACACGGTC GTCTGTCGCC GCAGGAGCGT GAAGCGGCTG GTATCCGCGA CAGCCTGATC
CGTGTTGCCG TGGGTCTGGA AGACGTGGCT GACCTGCAGG CTGACCTGGC GCGCGGGCTG
GCGGCATTGT GA
|
|---|
| Protein sequence | MTDQWDAGRL DSDLEGVGFD TLAVRAGQNR TPEGEHSEAL FLTSSYVFRT AADAAARFAG
ETPGNVYSRY TNPSVRAFEE RLAAMEGAEQ AVGTSTGMAA ILAVVMSLCS AGDHVLVSQS
VFGSTISLFE KYFKRFGVEV DYVPLVDLTG WEKAIKANTK LLIVESPSNP LAELVDITAL
SEIAHAQGAM LVVDNCFSTP ALQQPLKLGA DIVFHSATKF IDGQGRCMGG VVAGRTEQMK
EVVGFLRTAG PTLSPFNAWI FTKGLETLRL RMRAHCESAQ ALAEWLEQQD GVEKVHYAGL
PSHPQHELAK RQMSGFGAVV SFEVKGGKEG AWRFIDATRV ISITTNLGDS KTTIAHPATT
SHGRLSPQER EAAGIRDSLI RVAVGLEDVA DLQADLARGL AAL
|
|---|
| |