Gene PP_1893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1893 
SymbolfadE 
ID1043191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2134300 
End bp2136747 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content65% 
IMG OID637145301 
Productacyl-CoA dehydrogenase 
Protein accessionNP_744048 
Protein GI26988623 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000141749 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTGCTGT TGTGGTTGGT GGTGCTGGTG ATCGGCGCGG CGTACCTCAC GCACCGGCGC 
CTGGCGCCCT TGCAGATTCT CGGCATCGTG GCGGCCTATG TGCTGTTGAT GGGCATTTTC
AGCAGTGCCC CCGGCTGGCT GCTGGCGCTG ATCTGGGTGG TGCTGGCCCT GAAGATCGCC
CTGGTTGCGC TCCCGCAGTG GCGACGCAAA CTCTTTACCG CCCCGGTATT CCGCTGGTTC
CAGCGCACCC TGCCACCCAT GTCGCAGACC GAGCGCGAAG CCATCGACGC CGGTACCGTG
TGGTGGGACG GCGAACTGTT CAGTGGCCGC CCCGACTGGC GCACCTTGCT GGCCTACCCG
GCACCGAAAC TGACCGAAGA AGAACAGGCC TTCATCGATG GCCCGACCGA AGCACTGTGC
GCCATGGTCA GCGACTGGCA GATTGGCCAG GATCTGGACC TGCCGCCCGA AGCCTGGGCA
CATATCAAGC AACATGGCTT TTTCGCCCTG ATCATCCCCA AGGAATACGG CGGCAAGGGC
TTCTCCGCCT ACGCCCACTC CCAGGTGGCG ATGAAGCTGG CCACCCGGAG CGGCGACCTG
GCCTCCACGG TGATGGTGCC CAACTCCCTG GGCCCTGCCG AACTGCTGCT GCACTACGGC
ACCGACGAAC AACGCAACCG CTACCTGCCG CGCCTGGCCC GTGGCGAGGA AATCCCCTGT
TTCGCCCTCA CCGGGCCGCT GGCCGGTTCG GACGCTGGCG CCATGCCCGA CACCGGCATC
ATCTGCAAAG GCCAGTGGCA AGGCGAAGAA GTGATCGGCC TGCGCCTGAA CTGGGAAAAG
CGCTACATCA CCCTCGGCCC GGTCGCCACC CTGCTGGGCC TGGCCTTCAA AGCCTACGAC
CCCGACCATC TGTTGGGCGA ACAGGAGGAG CTCGGCATCA GCCTGGCCCT GATCCCCACC
GACACGCCCG GCGTCGAGAT CGGCAAACGC CACCTGCCGC TGGGCGCCGC CTTCATGAAC
GGCCCCAACA GCGGCAAAGA CGTGTTCGTA CCGCTGGACT TCCTGATCGG TGGCCAGGCC
ATGCTCGGCA AGGGCTGGAT GATGTTGATG AACTGCCTGT CGGTGGGCCG CTCCATCTCA
CTGCCGGCGG TCGGCACCGG TGCCGCCAAG TACACCAGCC TGGTGACCGG CCAGTACGCC
AATATCCGCG AGCAGTTCAA CGTGCCATTG GCGGCCTTCG AAGGCATCCA GGAATCGCTG
GCACGCATTG GCGGCAACGC CTGGCTGATG GACAGTGCCC GCCTGCTGAC CGCCAAGGCC
GTGGACCTGG GCGAAAAGCC CTCGGTGCTG TCGGCGATCC TCAAGTACCA CCTGACCGAG
CGTGGCCGCG AATGCATCCA GCACGCCATG GACGTGCACG GTGGCAAGGG CATCATCATG
GGCCCGAACA ACTACCTGGG CCGCAACTGG CAAGGTGCGC CGATCTTCAT CACGGTCGAA
GGTGCCAACA TCCTTTCACG CAACCTGATG ATCTTCGGCC AGGGCGCCAT TCGCTGCCAT
CCGTTCGTGC TCAAGGAAAT GGCATTGGCC GGGCGTGAAG ACCACGATCA GGCACTCAAG
GAATTCGATG ACCTGCTGAT GAAACACATC CTGTTCGCCG CCGGCAATGC GGCCAGTACC
TTGGTCTACG GCCTGGGGCT GGGTCGCTTT GAGCGGGTGC CGGGCGATGC CCTGAGCCAA
GGCTACTTCC GCGCCCTGAA CCGCCAGGCG GCGGCGTTTG CCATGATGGC CGACCTTTCG
ATGATGCTGC TGGGTGGGGC GCTCAAGCGC CGCGAGCGCC TCAGCGCCCG GCTTGGCGAT
GTGCTGAGCT ATCTGTACCT CGCCAGCGCT GCCCTGAAGC GCTATCACGA CCAGGGCTCG
CCCGAATACC TGCAGCCGCT GCTGCGCTGG GCCATGGAAG AAAGCCTGGG CCAGACGGAG
CGTGCGCTGG ACCGCCTGCT CGACAATTTC CCCAACCGCT TCGTCGGCTG CGCGCTGCGG
GTACTGGTGT TCCCCTTCGG CCGCCGCCAT AAGGGCCCCG GTGATGAACT GGATGCCGAG
GTGGCCGAGC TGATCGGCCG GCGCAAGGGC GATCCGGCAC TGGAGGAACT GCTGGCCGGC
TGCTACCGCC CACAGGCAGA ACACGACCCG GTCGCGGATC TGCAACGGGC CAGTGACCTG
CTCGAAGACA CGGCACAGTT GAGCAAGGCC CTGTACCAAG CCGTCAAGGA AGGCAAAGTC
CAGCCAGCCC CCGGCCAGTC CGGTATCGAC GCCGCCGTCA AGGCAGGCGT GCTGCAACCC
GACGATGGCC AGCGGCTGCA CGAGGCCGAA CAGGCTCGGC GCAAGGTGAT CGATGTCGAT
GCCTTCGACA AGGCGCAGTT GCTCGCCGTA CCGGGCAAGG TGCGCTGA
 
Protein sequence
MLLLWLVVLV IGAAYLTHRR LAPLQILGIV AAYVLLMGIF SSAPGWLLAL IWVVLALKIA 
LVALPQWRRK LFTAPVFRWF QRTLPPMSQT EREAIDAGTV WWDGELFSGR PDWRTLLAYP
APKLTEEEQA FIDGPTEALC AMVSDWQIGQ DLDLPPEAWA HIKQHGFFAL IIPKEYGGKG
FSAYAHSQVA MKLATRSGDL ASTVMVPNSL GPAELLLHYG TDEQRNRYLP RLARGEEIPC
FALTGPLAGS DAGAMPDTGI ICKGQWQGEE VIGLRLNWEK RYITLGPVAT LLGLAFKAYD
PDHLLGEQEE LGISLALIPT DTPGVEIGKR HLPLGAAFMN GPNSGKDVFV PLDFLIGGQA
MLGKGWMMLM NCLSVGRSIS LPAVGTGAAK YTSLVTGQYA NIREQFNVPL AAFEGIQESL
ARIGGNAWLM DSARLLTAKA VDLGEKPSVL SAILKYHLTE RGRECIQHAM DVHGGKGIIM
GPNNYLGRNW QGAPIFITVE GANILSRNLM IFGQGAIRCH PFVLKEMALA GREDHDQALK
EFDDLLMKHI LFAAGNAAST LVYGLGLGRF ERVPGDALSQ GYFRALNRQA AAFAMMADLS
MMLLGGALKR RERLSARLGD VLSYLYLASA ALKRYHDQGS PEYLQPLLRW AMEESLGQTE
RALDRLLDNF PNRFVGCALR VLVFPFGRRH KGPGDELDAE VAELIGRRKG DPALEELLAG
CYRPQAEHDP VADLQRASDL LEDTAQLSKA LYQAVKEGKV QPAPGQSGID AAVKAGVLQP
DDGQRLHEAE QARRKVIDVD AFDKAQLLAV PGKVR