| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1889 |
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| Symbol | fimD |
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| ID | 1043196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 2129700 |
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| End bp | 2132195 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637145297 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | NP_744044 |
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| Protein GI | 26988619 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000716127 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTCCTCC CCCCACTACG CTGGCGCACT ATGCGCCGCC AGCGCAGCGC ATTGCTGTGC
CTGCTGGGTA GCTCCACCTT GCTCTCAGCG CCCTACTCCC AGGCAGACTC CGGGTTCCAG
AGCGGCTTCC TGCGCCAAGT GCCTGGCCAA CCGCAAGCAG CGAGTGCCTG GTCGCTGAGC
ATGTTGACCA GCGATCAGGG GCTCGCGCCT GGCCGCTACC GGGTAGAGGT ACAGGTCAAT
CTTGAACCTG CCGGCCAGCA TGAGCTGGAT TTCCAGCCAG GCCCGGACGG TGAGCTGCAG
CCATGCCTGC CAGCCAGGCT GCTTGGCGAA TGGGGAATGC GCCTGGACGC ACTGGCCAAT
CCAGAGGATC AGGCGAGTGC CTGCCTGGAC TTGCTGACTG TCGTTCCTGG TGCACAAATC
GTCTTCACCC CTACGGAGCT GCACCTGGCC ATCTCGATTC CGCAGATCTC CATGCGCCGG
AACACCGCTA ACCAGGTCGA CCCTTCCCGC TGGGACAGTG GTATCAATGC CGCTTTCATC
AACTATCAGG CCTCCACCCT GAACGGCCGC AACCGCTCCT CTGGCCGTTA CACCAGCAAC
GACCTGTACC TGAACAGTGG TATCAACCTG GGCGAATGGC GCCTGCGCAG TACCCAGTCC
TGGCGCCAGG GCAGCCAGGG CAAGACTGAA TGGACCCGGG CACAGACCTA CGCACAGCGC
GATATACCGG GTACCCTCGC CAATCTGACG ATTGGCGAAA CCTTCACGGA CAGGGAGGTG
TTCCGTTCGG TGCCGATATC AGGCGTGCGC GTGGCCTCGG ACATGGGCAT GCTGGCCGAC
AACCAGCGCG GTTATGCCCC GATCATTCGC GGCGTGGCCC AGAGCCGGGC GAAAGTCGAG
ATCTGGCAGC ATGGTTATCC GATCTACTCG ACGTACGTCA GCGCCGGCCC CTACGCCATC
GACGACCTGA GTACCGCAGG CAGCGGCGAG CTGGAAGTCG TCGTGACCGA GGCCGATGGC
CAGGTCCGCC GCTTCATCCA GCCGTACTCG ACCATGAGCA ATCTGCTGCG CCCAGGCGTA
TGGCGTTACA GTGCCACGGT CGGGCGCTAC AACCCCTCCA GCGACCTCGA GACCCCGCTG
CTCTGGCAAG GCACGCTGGC CGTAGGCTCC TACTGGGACA CCACGGTTTA CGGCGGCTTG
ATGGCCAGCG AATTCTACCG CGCGGGCAAC CTGGGGTTTA GCAAGGACCT GGGCCACTTG
GGCGCAGTGG CCTTCGATGT AACGCAGGCG TCCAGCGCAA TCGACAATGC CCATGAGCGC
GAGGTGCAGG GTTCCAGTTA CGCCCTGAAG TATGCCAAGG CCTTCACCAC TCAAACCAAC
CTGCGCTTTG CCGGATATCG CTATTCGACC CAAGGCTACC GTGACTTCGA TGAAGTGGTG
CGCCAGCGCA GCCAGGACAC TACGTTCAGC GGCAGTCGCC GCAGCCGCCT GGAGGCCTCG
GTCCACCAGA GCCTGGGCAG GACCAGCTCG CTGACCCTGA CGCTGTCGCA ACAGGACTAC
TGGCGCAGCA ATGCCACCCA ACGGCAATAC CAGTTCAACT TCAATACCCA GCATCGGGGT
GTAGGCTACA ACCTGTTCGC CTCACAATCG TTGACCGACC GTTACGGCAA TGATCGTCAG
TTTGGCCTGA GCGTGACGGT ACCCTTGCAT TTCGGTCACC GCGCCAATGC GACCTTCGAC
CTGCAGCACA ACGCCAACGG CTACAGCCAG CGTGCCACGC TCAGCGGCAG CGACAGCGCG
CGCGCGCTGA GCTACAGCAC CAGCCTGAGC CGTGACGAAC ACGCCCGCAA GACAGCGGCA
CTGTCGCTCG GCCATCAGGC CCCCTATGCC AGCGTGAGTG CTGGCTATAC CGAAGCCGAC
AACTACCGCA GCCTGTCATT GAATGCCAGT GGTGCGGTGC TGCTGCATGC TGACGGGCTG
GAGTTCGGCC GATACCTGGG AGATACCGCG GCCTTGATCG AAGTCCCTGG CGTGGCCAAT
GTGGGCCTGC AAAACGCAAC GGGTACGCGC ACCAATTCAC GCGGTTATGC ACTTTTGCCC
TACCTGCAAC CGTACCGGAC CAATTCGGTG GTCCTGGAAA CCGACCGTCT CGATCCTGAT
GTGGAAATCG ACAACGGCAT CGCCCAGGTA GTGCCTCGCC AGGGTGCAGT GGTCAAGCAC
CGCTTCGAGG CACGCCGCGT TTCACGCCTT GTACTGACCC TGCACGATAC CCAGGGTCAA
CCGCTGCCCT TTGGGGCCCA GGTGCTGGCC GAGAACGGTA CCCAACTGGG CATGGTCGGG
CAGGCGGGCC TGGTAATGCT CACCAACCCC AGCCAGGAGC AACCGCTGCA GGTGAGTTGG
GGCGAACAGC CCAACGCCGG CTGCCAGGTG CATCTCGATG AACTGGACGC TCCCGTCGTC
GACGGCTATC GCCAGCAAAC CCTGACCTGT ATCTAG
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| Protein sequence | MVLPPLRWRT MRRQRSALLC LLGSSTLLSA PYSQADSGFQ SGFLRQVPGQ PQAASAWSLS
MLTSDQGLAP GRYRVEVQVN LEPAGQHELD FQPGPDGELQ PCLPARLLGE WGMRLDALAN
PEDQASACLD LLTVVPGAQI VFTPTELHLA ISIPQISMRR NTANQVDPSR WDSGINAAFI
NYQASTLNGR NRSSGRYTSN DLYLNSGINL GEWRLRSTQS WRQGSQGKTE WTRAQTYAQR
DIPGTLANLT IGETFTDREV FRSVPISGVR VASDMGMLAD NQRGYAPIIR GVAQSRAKVE
IWQHGYPIYS TYVSAGPYAI DDLSTAGSGE LEVVVTEADG QVRRFIQPYS TMSNLLRPGV
WRYSATVGRY NPSSDLETPL LWQGTLAVGS YWDTTVYGGL MASEFYRAGN LGFSKDLGHL
GAVAFDVTQA SSAIDNAHER EVQGSSYALK YAKAFTTQTN LRFAGYRYST QGYRDFDEVV
RQRSQDTTFS GSRRSRLEAS VHQSLGRTSS LTLTLSQQDY WRSNATQRQY QFNFNTQHRG
VGYNLFASQS LTDRYGNDRQ FGLSVTVPLH FGHRANATFD LQHNANGYSQ RATLSGSDSA
RALSYSTSLS RDEHARKTAA LSLGHQAPYA SVSAGYTEAD NYRSLSLNAS GAVLLHADGL
EFGRYLGDTA ALIEVPGVAN VGLQNATGTR TNSRGYALLP YLQPYRTNSV VLETDRLDPD
VEIDNGIAQV VPRQGAVVKH RFEARRVSRL VLTLHDTQGQ PLPFGAQVLA ENGTQLGMVG
QAGLVMLTNP SQEQPLQVSW GEQPNAGCQV HLDELDAPVV DGYRQQTLTC I
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