| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1872 |
|---|
| Symbol | |
|---|
| ID | 1043224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 2095263 |
|---|
| End bp | 2096474 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637145275 |
|---|
| Product | aminotransferase AlaT |
|---|
| Protein accession | NP_744027 |
|---|
| Protein GI | 26988602 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.866522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.490058 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTCA GCAAATCGAA CAAGCTCGCC AATGTCTGCT ACGACATTCG CGGCCCAGTG
CTCAAGCACG CCAAACGCCT GGAGGAGGAA GGCCACCGCA TCCTCAAGCT GAACATCGGC
AACCCGGCGC CGTTTGGCTT CGAGGCGCCT GATGAAATCC TTCAGGATGT GATCCGCAAC
CTGCCCACCG CACAGGGCTA CAGCGACTCC AAAGGCCTGT TCAGTGCCCG CAAGGCGGTG
ATGCAGTACT GCCAGCAGAA AGATATCGAA GGCGTCACCA TCGAGGACAT CTACCTGGGT
AATGGTGTGT CCGAGCTGAT CGTCATGTCG ATGCAGGCGC TGCTCAACAA CGGCGACGAA
GTGCTGATCC CGGCCCCCGA CTACCCGCTG TGGACTGCCG CCGTGAGCCT GGCCGGCGGC
AAGCCGGTGC ACTACCTGTG CGACGAGCAG GCCGACTGGT TCCCTGACCT TGAGGACATC
AAGGCCAAGA TCACCCCGAA CACCAAGGCG CTGGTGATCA TCAACCCGAA CAACCCGACC
GGCGCCGTCT ACTCCAAAGA ACTGCTGCTG GGCATGCTGG AGCTGGCCCG CCAGCACAAC
CTGGTGGTGT TCTCCGACGA GATCTACGAC AAGATCCTGT ACGACGAAGC CGTGCACATC
AGCACCGCCT CGCTGGCTCC GGACCTGCTG TGCCTGACCT TCAACGGCTT GTCCAAGTCG
TACCGGGTGG CGGGCTTCCG CTCTGGCTGG CTGATCATTT CCGGGCCCAA GCACCACGCA
CACAGCTACA TCGAAGGCAT CGACATGCTG GCCAACATGC GCCTGTGCGC CAACGTGCCG
GCCCAGCATG CCATCCAGAC CGCGCTGGGC GGCTACCAGA GCATCAACGA CCTGGTGCTG
CCGCCGGGCC GCCTGCTGGA GCAGCGCAAC CGCACCTACG AACTGCTCAA CGACATCCCT
GGCGTCAGCT GCGTGAAACC GATGGGCGCG CTGTATGCGT TCCCGCGGAT CGACCCGAAG
GTTTGCCCGA TCCTCAACGA CGAGAAGTTC GCCCTTGACC TGCTGCTGTC GGAGAAGCTG
CTGATCGTAC AAGGGACGGC GTTCAACTGG CCGTGGCCGG ACCACTTCCG CGTGGTGACC
TTGCCGCGGG TGGATGACCT GGAAGCGGCA ATTGGCCGGA TCGGCAATTT CCTGAAGGGT
TATTCGCAGT AG
|
|---|
| Protein sequence | MQFSKSNKLA NVCYDIRGPV LKHAKRLEEE GHRILKLNIG NPAPFGFEAP DEILQDVIRN
LPTAQGYSDS KGLFSARKAV MQYCQQKDIE GVTIEDIYLG NGVSELIVMS MQALLNNGDE
VLIPAPDYPL WTAAVSLAGG KPVHYLCDEQ ADWFPDLEDI KAKITPNTKA LVIINPNNPT
GAVYSKELLL GMLELARQHN LVVFSDEIYD KILYDEAVHI STASLAPDLL CLTFNGLSKS
YRVAGFRSGW LIISGPKHHA HSYIEGIDML ANMRLCANVP AQHAIQTALG GYQSINDLVL
PPGRLLEQRN RTYELLNDIP GVSCVKPMGA LYAFPRIDPK VCPILNDEKF ALDLLLSEKL
LIVQGTAFNW PWPDHFRVVT LPRVDDLEAA IGRIGNFLKG YSQ
|
|---|
| |