Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1805 |
Symbol | wbpM |
ID | 1043297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2028258 |
End bp | 2030324 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637145207 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | NP_743960 |
Protein GI | 26988535 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.287116 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.196663 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGGCGCC ATGCTCCGGT TGTTCAATCG AGGTCCTTTT GCGGTGAGGA GAGCCGAATG AGCGACGCAA AGAACAGCAG GGTGCGTGAG TACCTAGTTA ACTTGTCCAG GCGGAAAAAG CGTCTTGTGC AAGTGTGCGC CGACGTGGTG CTGATCTGGT TGGCGTTATG GTTGTCTTTT ATCGTGCGCC TGGGCATCGA TGAAATGTAC AACCCGGTCA TCAAACACGC CTGGTTGTTC ATGGTTGCGC CTCTCGTAGC CATTCCGCTG TTCATTCGTT TTGGCATGTA CCGGGCGGTG ATGCGCTACT TCGGCAATGA TGCATTGGTG ACCATTATCA AGGCCGTTAC CCTGTCATCG CTCATTCTGG CTGTGGTTGT GTACTGGTAC AGCAACCATC AGGTAATCGT GCCGCGCTCG ATCATTTTCA ACTATTGGTG GTTGAGCATG GTCATCATTG GTGGTTTACG CCTGATCATG CGCCAGTATT TCCTGGGTGA CTGGTTTACC GGCGCCCATC AGATACCGTT CGCCAACCGC GATGATGGCC TGGTCAAGGT AGCCATCTAT GGTGCAGGCA CCGCCGGCAA CCAGCTGCTG GCAGCGTTGC GCATGGGGCG GGCGATGCGC CCGGTGGCGT TCATTGATGA TGACAGTGAC CTTGCCAACC GGGTCATTTC CGGTTTGCAG GTGTACAAGC CCAAGCATCT GCAGCAGATG ATCAAGGAAA CCGGTGCACA GGAAATCCTC CTCGCCCTGC CTTCGGTATC GCGCGCCCGG CGCAAGGAGA TTCTCGCCTT GCTCGAACCT TACCCGTTGC ACGTGCGCAG CGTGCCGGCC TTTGCCGACC TGGCAAGTGG CCGGGTCAAA GTGGATGACA TCCAAGACGT GGACATTGCC GATTTGCTTG GGCGTGACCC GGTACCCGCC AAGGAAGGGC TGCTCGAACG CTGCATCCAC AAGCAAACGG TACTGGTCAC CGGGGCCGGT GGCTCCATCG GCTCCGAGCT TTGCCGCCAG ATCATAGGGC TTGGGCCAAC GACATTGCTG CTGTTCGACC ACAGCGAGTA CAACCTCTAC GCTATCCTCA GTGAGCTGGA GCAACGCGTT GCGCGCGAGT CGCTGCCGGT GCGACTGCTG CCCATTCTGG GGTCGGTACG CAATCAGCAG CATCTTGCCC ACGTTATGTC CACTTGGCGG GTAGCCACCG TCTACCACGC GGCGGCTTAC AAACATGTGC CCATGGTTGA GCACAACATG GCGGAGGGTA TACTCAACAA TGTGTTCGGC ACGCTTTGTA CCGCACAGGC TGCTTTGCAA TCAGGCGTTG CCAACTTCGT GCTTATCTCG ACTGACAAGG CGGTGCGCCC CACGAACGTG ATGGGCGGTA CCAAGCGTCT TTCCGAGTTG ATTCTGCAAG CACTAAGCCG CGAGGCGGCA CCCGTCATGT ACGGTGACAG CAGCAAGATC GCCCGGGTGA ACAAAACCCG CTTCACCATG GTGCGCTTTG GCAATGTGCT GGGCTCCTCT GGCTCGGTGA TCCCGTTGTT CCACAAGCAG ATCAAGGCCG GTGGCCCAAT TACGGTTACC CACCCGAAGA TTACCCGCTA TTTCATGACT ATCCCCGAAG CCGCTCAACT GGTGGTTCAG GCAGGGGCGA TGGGGCAGGG CGGGGACGTA TTTGTTCTCG ACATGGGGGA GCCGGTAAAA ATTGTTGAGC TGGCTGAGAA AATGATTCAT CTCTCGGGCC TTAGCGTACG TAGCTCGGGT AACCCCAATG GTGATATCGC CATCGAGTTC ACGGGGTTGC GCCCAGGTGA GAAGCTTTTT GAAGAGTTGT TGATTGGCGA TGACGTTTCG CCTACCGTCC ACCCGATGAT CATGGTAGCG AATGAAGACT ACGTCACTTG GGACGTCTTG CGTGAACGTA TTGCCGTGTT ACTCAATGCA GTGGCGGTGG ATGACTTTGG CCGTATCCGG CAACTGTTGC GTGAACTAGT GAACGGGTAT GTGCCGGAAG GAGAAATTGT CGACTGGATC TACCAACAGC AGCGGCAGGA CAGTTGA
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Protein sequence | MGRHAPVVQS RSFCGEESRM SDAKNSRVRE YLVNLSRRKK RLVQVCADVV LIWLALWLSF IVRLGIDEMY NPVIKHAWLF MVAPLVAIPL FIRFGMYRAV MRYFGNDALV TIIKAVTLSS LILAVVVYWY SNHQVIVPRS IIFNYWWLSM VIIGGLRLIM RQYFLGDWFT GAHQIPFANR DDGLVKVAIY GAGTAGNQLL AALRMGRAMR PVAFIDDDSD LANRVISGLQ VYKPKHLQQM IKETGAQEIL LALPSVSRAR RKEILALLEP YPLHVRSVPA FADLASGRVK VDDIQDVDIA DLLGRDPVPA KEGLLERCIH KQTVLVTGAG GSIGSELCRQ IIGLGPTTLL LFDHSEYNLY AILSELEQRV ARESLPVRLL PILGSVRNQQ HLAHVMSTWR VATVYHAAAY KHVPMVEHNM AEGILNNVFG TLCTAQAALQ SGVANFVLIS TDKAVRPTNV MGGTKRLSEL ILQALSREAA PVMYGDSSKI ARVNKTRFTM VRFGNVLGSS GSVIPLFHKQ IKAGGPITVT HPKITRYFMT IPEAAQLVVQ AGAMGQGGDV FVLDMGEPVK IVELAEKMIH LSGLSVRSSG NPNGDIAIEF TGLRPGEKLF EELLIGDDVS PTVHPMIMVA NEDYVTWDVL RERIAVLLNA VAVDDFGRIR QLLRELVNGY VPEGEIVDWI YQQQRQDS
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