| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1751 |
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| Symbol | mnmC |
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| ID | 1043421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 1951573 |
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| End bp | 1953537 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637145154 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | NP_743907 |
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| Protein GI | 26988482 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.266449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCC TCCTCCAGCA CGCCCAGATC GACTGGGACG ACCAGGGCCG CCCCCATTCG
CGGCACTATG ACGACGTCTA TTTCGCAGTC AACGAAGGCA TCGAAGAAAC CAAGCACGTG
TTCCTCGGCC AGACCCGCCT GGCCGAGCGT TTTGCCAACC TGGCGCCGCA CGCCTGCACG
GTGATCGGCG AAACCGGTTT TGGCACCGGC ATGAATTTTT TCTGCGCCTG GCAGCTGTTC
GACCAGCACG CACACAGCGA CGCGCGCCTG CACTTCGTCA GCGTCGAGAA GTACCCCCTC
GACCACGCCG ACATGGCCCG CGCAGTGCGC TTGTGGCCTG AACTGGCCGC CTATACCGAG
CCGCTGCTGG AGCAATACGT GGCGGTGCAC CCGGGCTTTC AGCAGTTCAC CTTCACCGGT
GGCAGGGTCA CCCTGACCCT GTTGATAGGC GATGTGCTGG AACAGTTGCC GCAACTCGAT
GCGCAGATCG ATGTGTGGTT CCTCGACGGC TTCGCCCCCG CCAAGAACCC CGACATGTGG
ACTCCGGAGC TGTTTGCACA ACTGGCGCGG CTATCGCATC CGGGCACGGT GCTGGGTACC
TTCACCACCA CCGGCTGGGT ACGTCGCAGC CTGGTCGAAG CCGGCTTCGC CATGAAGAAG
GTGCCAGGCA TCGGCAAGAA GTGGGAGGTG ATGAGCGGCG CCTACGTCGG CCCCCTGCCC
GGCCCATGCG CGCCTTGGTA CGCGCGCCCC GCGGTGACAC AGGGGCCGCG CGAGGCGCTG
GTGATCGGTG CCGGACTTGC CGGCAGCAGC AGCGCCGCCA GCCTGGCCCG GCGCGGCTGG
CAGGTAACCG TGCTGGAGCG CCACGAAGCC CCCGCCCAGG AGGCTTCGGG CAACCCACAA
GGGGTGCTGT ACCTCAAGCT GTCTGCCCAT GGCACCGCGC TGTCGCAGAT GATCCTGTCC
GGGTTCGGCT ACACACGGCG CCAGCTGCAG CGCTTGCAGC GTGGCCGTGA CTGGGATGCC
TGCGGGGTGC TGCAACTGGC TTTCGACAGC AAGGAGGCCG AGCGCCAGGG CAAGCTGGCT
GCCGCCTTCG ACCCCGGCTT GCTGCACTGC CTGGCGCGCG CCGAGGCCGA AGCTATCGCC
GGCGTGGCGT TGCCTGGCGG CGGGTTGTTC TACCCCGAAG GTGGCTGGGT GCACCCGCCA
GCGCTGTGCC AGCAGCAGTT GCAGCACCCT GGTATTCATT TGGTGACGCA CCAGGAAGTG
CTCGAACTGC GCAAAGTGGA TGAACAGTGG CAAGCCTGGG CTGGCGACCA GCTGTTAGCC
CGCGCTCCAG TGGTGGTCCT GGCCGGCGCG GCGGATGTGC TGCGCTTCGA ACCTTGCGCG
CAGTTACCAC TCAAGCGCAT CCGCGGGCAG ATCACCCGCT TGCCGGCCAC CGTCAGCAGC
CAGGCACTGC GCACCGTGGT GTGCGCGGAA GGCTATGTGG CACCGCCGCG CGAGGGTGAA
CATACACTGG GCGCCAGTTT TGACTTCCAT AGCGAAGACC TTGCGCCGAC AGTGGCCGAG
CACCAGGGCA ACCTGGCGCT GCTGGACGAA ATTTCCGTCG ATCTGGCGCA ACGGCTGGCT
GTGGCTGAAC TGGACCCCGA GCAATTGCAG GGACGTGCTG CGTTCCGTTG CACCAGCCCG
GATTACCTGC CGATCGTCGG CCCTATCGCC GACGCGCAGG CGTTTGCCGA AGCCTATGCA
GTACTGGGCC GGGATGCGCG GCAAGTACCG GATGTGCCCT GCCCTTGGCT GGGCGGGTTG
TATGTGAACA GCGGGCATGG CTCACGCGGG TTGATCACGG CACCGTTGAG TGGCGAGCTG
GTGGCGGCCT GGGTATGTGG GGAACCGCTG CCATTGCCGC GGGCAGTGGC GCAGGCTTGC
CATCCAAACC GGTTTGGATT GCGCCGGTTG ATCCGGGGGA AATGA
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| Protein sequence | MPTLLQHAQI DWDDQGRPHS RHYDDVYFAV NEGIEETKHV FLGQTRLAER FANLAPHACT
VIGETGFGTG MNFFCAWQLF DQHAHSDARL HFVSVEKYPL DHADMARAVR LWPELAAYTE
PLLEQYVAVH PGFQQFTFTG GRVTLTLLIG DVLEQLPQLD AQIDVWFLDG FAPAKNPDMW
TPELFAQLAR LSHPGTVLGT FTTTGWVRRS LVEAGFAMKK VPGIGKKWEV MSGAYVGPLP
GPCAPWYARP AVTQGPREAL VIGAGLAGSS SAASLARRGW QVTVLERHEA PAQEASGNPQ
GVLYLKLSAH GTALSQMILS GFGYTRRQLQ RLQRGRDWDA CGVLQLAFDS KEAERQGKLA
AAFDPGLLHC LARAEAEAIA GVALPGGGLF YPEGGWVHPP ALCQQQLQHP GIHLVTHQEV
LELRKVDEQW QAWAGDQLLA RAPVVVLAGA ADVLRFEPCA QLPLKRIRGQ ITRLPATVSS
QALRTVVCAE GYVAPPREGE HTLGASFDFH SEDLAPTVAE HQGNLALLDE ISVDLAQRLA
VAELDPEQLQ GRAAFRCTSP DYLPIVGPIA DAQAFAEAYA VLGRDARQVP DVPCPWLGGL
YVNSGHGSRG LITAPLSGEL VAAWVCGEPL PLPRAVAQAC HPNRFGLRRL IRGK
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